Strain Fitness in Pseudomonas putida KT2440 around PP_0926

Experiment: pH 8

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 8
1,067,288	+		PP_0925	0.59	-0.1
1,067,288	+		PP_0925	0.59	-0.0
1,067,288	+		PP_0925	0.59	+1.0
1,067,288	+		PP_0925	0.59	+0.9
1,067,321	+		PP_0925	0.63	+0.9
1,067,321	+		PP_0925	0.63	+0.4
1,067,322	-		PP_0925	0.63	-1.0
1,067,322	-		PP_0925	0.63	+0.3
1,067,352	-		PP_0925	0.67	-1.5
1,067,690	-				-0.2
1,067,761	-				-1.8
1,067,797	+				-1.6
1,067,945	-		PP_0926	0.12	+0.6
1,068,009	+		PP_0926	0.18	-0.4
1,068,009	+		PP_0926	0.18	-0.5
1,068,054	+		PP_0926	0.23	-1.4
1,068,055	-		PP_0926	0.23	-0.3
1,068,138	+		PP_0926	0.32	-0.7
1,068,138	+		PP_0926	0.32	+0.3
1,068,138	+		PP_0926	0.32	+1.7
1,068,138	+		PP_0926	0.32	+0.7
1,068,138	+		PP_0926	0.32	-2.5
1,068,139	-		PP_0926	0.32	+2.1
1,068,139	-		PP_0926	0.32	-1.3
1,068,139	-		PP_0926	0.32	+0.3
1,068,140	+		PP_0926	0.32	+0.9
1,068,201	+		PP_0926	0.39	-0.8
1,068,202	-		PP_0926	0.39	+1.9
1,068,210	+		PP_0926	0.40	-0.7
1,068,211	-		PP_0926	0.40	-1.3
1,068,211	-		PP_0926	0.40	+0.1
1,068,258	+		PP_0926	0.45	-0.7
1,068,258	+		PP_0926	0.45	+0.5
1,068,258	+		PP_0926	0.45	+2.1
1,068,258	+		PP_0926	0.45	+1.5
1,068,258	+		PP_0926	0.45	+1.1
1,068,259	-		PP_0926	0.45	-0.2
1,068,259	-		PP_0926	0.45	-1.3
1,068,281	-		PP_0926	0.47	-0.0
1,068,291	+		PP_0926	0.48	+3.4
1,068,504	-		PP_0926	0.71	-2.7
1,068,504	-		PP_0926	0.71	+1.6
1,068,624	+		PP_0926	0.83	+1.5
1,068,625	-				-2.6
1,068,625	-		PP_0926	0.83	-1.5
1,068,625	-		PP_0926	0.83	+1.5
1,068,625	-		PP_0926	0.83	-2.5
1,068,628	+				+0.9
1,068,628	+		PP_0926	0.84	+1.3
1,068,629	-		PP_0926	0.84	+1.0
1,068,629	-		PP_0926	0.84	-0.4
1,068,654	+		PP_0926	0.86	+0.9
1,068,654	+		PP_0926	0.86	+0.9
1,068,654	+		PP_0926	0.86	+1.0
1,068,654	+		PP_0926	0.86	-1.7
1,068,654	+		PP_0926	0.86	+1.3
1,068,713	+				+0.7
1,068,714	-				-0.5
1,068,781	-				-0.7
1,068,781	-				-0.6
1,068,781	-				-1.1
1,068,798	+				-0.3
1,068,826	+				+0.4
1,068,827	-				+2.1
1,068,827	-				+0.7
1,068,827	-				-3.0
1,069,092	-		PP_0927	0.19	+1.9
1,069,142	+		PP_0927	0.22	-2.0
1,069,142	+		PP_0927	0.22	-1.1
1,069,143	-		PP_0927	0.22	-0.1
1,069,143	-		PP_0927	0.22	+0.9
1,069,143	-		PP_0927	0.22	-2.2
1,069,180	+		PP_0927	0.25	+0.9
1,069,184	+		PP_0927	0.25	+0.2
1,069,184	+		PP_0927	0.25	+2.7
1,069,185	-		PP_0927	0.25	-1.9
1,069,185	-		PP_0927	0.25	-1.5
1,069,185	-		PP_0927	0.25	-1.2
1,069,185	-		PP_0927	0.25	+1.7
1,069,193	+		PP_0927	0.26	+0.2
1,069,193	+		PP_0927	0.26	+2.0
1,069,193	+		PP_0927	0.26	-0.1
1,069,193	+		PP_0927	0.26	+1.5
1,069,272	+		PP_0927	0.32	+0.3
1,069,272	+		PP_0927	0.32	+1.1
1,069,273	-		PP_0927	0.32	-0.3
1,069,273	-		PP_0927	0.32	+0.0
1,069,281	-		PP_0927	0.32	-0.1
1,069,281	-		PP_0927	0.32	-0.4
1,069,447	-		PP_0927	0.45	-1.8
1,069,447	-		PP_0927	0.45	+0.9
1,069,562	+		PP_0927	0.53	-3.0
1,069,562	+		PP_0927	0.53	-0.5
1,069,562	+		PP_0927	0.53	+2.5
1,069,562	+		PP_0927	0.53	-0.7
1,069,563	-		PP_0927	0.53	+1.9
1,069,563	-				+0.9
1,069,567	+		PP_0927	0.53	+0.2
1,069,568	-		PP_0927	0.54	-0.8
1,069,581	-		PP_0927	0.54	-0.0
1,069,613	+		PP_0927	0.57	-0.4
1,069,613	+		PP_0927	0.57	-0.7
1,069,614	-		PP_0927	0.57	-1.1
1,069,703	-		PP_0927	0.63	-1.1
1,069,703	-		PP_0927	0.63	-2.4
1,069,703	-		PP_0927	0.63	-0.2
1,069,733	+		PP_0927	0.66	+0.6
1,069,733	+		PP_0927	0.66	+0.0
1,069,734	-		PP_0927	0.66	+0.9
1,069,748	+		PP_0927	0.67	-0.9
1,069,748	+		PP_0927	0.67	+0.9
1,069,748	+		PP_0927	0.67	-3.7
1,069,749	-		PP_0927	0.67	-3.7
1,069,756	+		PP_0927	0.67	+2.7
1,069,762	+		PP_0927	0.68	+0.9
1,069,763	-		PP_0927	0.68	+0.2
1,069,763	-		PP_0927	0.68	-3.7
1,069,763	-		PP_0927	0.68	-1.1
1,069,763	-		PP_0927	0.68	-0.2
1,069,763	-		PP_0927	0.68	-0.3