Strain Fitness in Pseudomonas putida KT2440 around PP_0924

Experiment: pH 8

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 8
1,064,860	+		PP_0922	0.86	+1.9
1,064,860	+		PP_0922	0.86	-3.2
1,064,860	+		PP_0922	0.86	-2.3
1,064,860	+		PP_0922	0.86	+0.9
1,064,861	-		PP_0922	0.86	-1.5
1,064,861	-		PP_0922	0.86	+0.1
1,064,942	-				-0.7
1,064,942	-				+1.6
1,064,959	-				-0.4
1,065,172	+		PP_0923	0.15	+0.7
1,065,176	+		PP_0923	0.15	-0.3
1,065,176	+		PP_0923	0.15	+3.2
1,065,232	+				+1.9
1,065,232	+		PP_0923	0.22	-1.1
1,065,300	+		PP_0923	0.31	+0.9
1,065,300	+		PP_0923	0.31	+1.1
1,065,301	-		PP_0923	0.31	+1.2
1,065,301	-		PP_0923	0.31	+0.9
1,065,392	-		PP_0923	0.43	+3.7
1,065,656	+		PP_0923	0.76	-0.6
1,065,656	+		PP_0923	0.76	+0.9
1,065,656	+		PP_0923	0.76	+0.3
1,065,657	-		PP_0923	0.76	+1.2
1,065,873	-				-4.0
1,065,975	+		PP_0924	0.17	+2.4
1,065,975	+		PP_0924	0.17	-1.7
1,065,975	+		PP_0924	0.17	+2.9
1,065,975	+		PP_0924	0.17	+2.2
1,065,976	-		PP_0924	0.17	+0.2
1,065,976	-		PP_0924	0.17	+0.9
1,065,976	-		PP_0924	0.17	-0.1
1,065,977	+		PP_0924	0.18	+0.5
1,065,977	+		PP_0924	0.18	-0.1
1,065,977	+				+0.9
1,065,978	-		PP_0924	0.18	-0.0
1,065,978	-		PP_0924	0.18	+2.9
1,065,978	-		PP_0924	0.18	-1.7
1,066,015	-		PP_0924	0.23	+0.3
1,066,079	+		PP_0924	0.31	+1.1
1,066,140	+		PP_0924	0.39	-1.7
1,066,160	+		PP_0924	0.42	+0.5
1,066,160	+		PP_0924	0.42	+1.5
1,066,166	+		PP_0924	0.43	+2.0
1,066,166	+		PP_0924	0.43	-1.9
1,066,166	+		PP_0924	0.43	-0.4
1,066,167	-		PP_0924	0.43	-0.2
1,066,167	-		PP_0924	0.43	-0.4
1,066,219	-		PP_0924	0.50	+0.9
1,066,252	-		PP_0924	0.54	+1.5
1,066,427	+		PP_0924	0.77	+1.0
1,066,427	+		PP_0924	0.77	-1.0
1,066,428	-		PP_0924	0.77	-1.7
1,066,428	-		PP_0924	0.77	+1.8
1,066,490	-		PP_0924	0.85	-0.5
1,066,490	-		PP_0924	0.85	+0.1
1,066,571	+				-0.4
1,066,571	+				+0.5
1,066,572	-				-1.3
1,066,600	+				+2.6
1,066,600	+				+0.7
1,066,601	-				+0.9
1,066,601	-				-2.1
1,066,612	+				+0.5
1,066,665	+				+2.5
1,066,665	+				-1.1
1,066,665	+				-0.9
1,066,666	-				+0.8
1,066,670	-				-0.2
1,066,670	-				+0.9
1,066,728	+				-1.9
1,067,288	+		PP_0925	0.59	-0.1
1,067,288	+		PP_0925	0.59	-0.0
1,067,288	+		PP_0925	0.59	+1.0
1,067,288	+		PP_0925	0.59	+0.9
1,067,321	+		PP_0925	0.63	+0.9
1,067,321	+		PP_0925	0.63	+0.4
1,067,322	-		PP_0925	0.63	-1.0
1,067,322	-		PP_0925	0.63	+0.3
1,067,352	-		PP_0925	0.67	-1.5