Strain Fitness in Pseudomonas putida KT2440 around PP_0922

Experiment: pH 8

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 8
1,063,425	+		PP_0920	0.56	+0.9
1,063,479	+		PP_0920	0.61	+1.2
1,063,480	-		PP_0920	0.61	+1.6
1,063,561	-		PP_0920	0.69	-2.5
1,063,576	+		PP_0920	0.70	+0.1
1,063,576	+		PP_0920	0.70	+0.0
1,063,577	-		PP_0920	0.70	-0.0
1,063,577	-		PP_0920	0.70	-1.7
1,063,655	+		PP_0920	0.78	-1.2
1,063,655	+		PP_0920	0.78	+0.2
1,063,655	+		PP_0920	0.78	+0.1
1,063,685	-		PP_0920	0.81	-0.1
1,063,758	-		PP_0920	0.88	-0.4
1,063,758	-		PP_0920	0.88	+1.1
1,063,758	-		PP_0920	0.88	-1.7
1,063,761	+		PP_0920	0.88	+0.9
1,063,761	+		PP_0920	0.88	+0.3
1,063,761	+		PP_0920	0.88	+0.4
1,063,762	-		PP_0920	0.88	-0.1
1,063,764	+		PP_0920	0.88	+1.5
1,063,764	+		PP_0920	0.88	-1.5
1,063,764	+		PP_0920	0.88	+0.5
1,063,765	-		PP_0920	0.88	-0.7
1,063,765	-		PP_0920	0.88	+2.2
1,063,835	-				+3.2
1,063,835	-				+3.0
1,063,835	-				+1.0
1,063,835	-				-0.8
1,063,895	+				+0.6
1,063,942	+		PP_0921	0.12	+1.4
1,063,942	+		PP_0921	0.12	+0.3
1,063,942	+		PP_0921	0.12	+2.2
1,063,942	+		PP_0921	0.12	-0.5
1,063,943	-		PP_0921	0.12	-1.7
1,063,943	-		PP_0921	0.12	-3.3
1,063,943	-		PP_0921	0.12	-0.4
1,064,183	-				-1.1
1,064,272	-				+0.7
1,064,273	+				-2.1
1,064,280	-				+1.4
1,064,311	+				+1.8
1,064,322	-				-0.2
1,064,347	+				+0.9
1,064,348	-				-0.8
1,064,366	-				+0.4
1,064,366	-				+0.5
1,064,366	-				-1.6
1,064,366	-				+0.9
1,064,422	+		PP_0922	0.11	+1.1
1,064,423	-		PP_0922	0.11	-2.6
1,064,509	+		PP_0922	0.26	-0.9
1,064,510	-		PP_0922	0.26	-1.0
1,064,632	+		PP_0922	0.47	+0.9
1,064,632	+		PP_0922	0.47	-0.6
1,064,633	-		PP_0922	0.47	-0.8
1,064,672	-		PP_0922	0.54	+0.1
1,064,758	+		PP_0922	0.68	-2.4
1,064,759	-				+0.9
1,064,860	+		PP_0922	0.86	+1.9
1,064,860	+		PP_0922	0.86	-3.2
1,064,860	+		PP_0922	0.86	-2.3
1,064,860	+		PP_0922	0.86	+0.9
1,064,861	-		PP_0922	0.86	-1.5
1,064,861	-		PP_0922	0.86	+0.1
1,064,942	-				-0.7
1,064,942	-				+1.6
1,064,959	-				-0.4
1,065,172	+		PP_0923	0.15	+0.7
1,065,176	+		PP_0923	0.15	-0.3
1,065,176	+		PP_0923	0.15	+3.2
1,065,232	+				+1.9
1,065,232	+		PP_0923	0.22	-1.1
1,065,300	+		PP_0923	0.31	+0.9
1,065,300	+		PP_0923	0.31	+1.1
1,065,301	-		PP_0923	0.31	+1.2
1,065,301	-		PP_0923	0.31	+0.9
1,065,392	-		PP_0923	0.43	+3.7
1,065,656	+		PP_0923	0.76	-0.6
1,065,656	+		PP_0923	0.76	+0.9
1,065,656	+		PP_0923	0.76	+0.3
1,065,657	-		PP_0923	0.76	+1.2
1,065,873	-				-4.0