Experiment: pH 8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0836 and PP_0837 are separated by 118 nucleotides PP_0837 and PP_0838 are separated by 168 nucleotides
PP_0836: PP_0836 - Sec translocation complex subunit SecF, at 973,582 to 974,490
_0836
PP_0837: PP_0837 - putative regulator of flagellation, at 974,609 to 975,151
_0837
PP_0838: PP_0838 - inositol monophosphatase / glycerol-2-phosphatase, at 975,320 to 976,138
_0838
Position (kb) 974
975
976 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 974.488 kb on + strand at 974.591 kb on + strand at 974.592 kb on - strand at 974.615 kb on - strand at 974.656 kb on - strand at 974.656 kb on - strand at 974.656 kb on - strand at 974.681 kb on + strand, within PP_0837 at 974.681 kb on + strand, within PP_0837 at 974.682 kb on - strand, within PP_0837 at 974.682 kb on - strand, within PP_0837 at 974.827 kb on + strand, within PP_0837 at 974.863 kb on + strand, within PP_0837 at 974.968 kb on + strand, within PP_0837 at 974.968 kb on + strand, within PP_0837 at 974.968 kb on + strand, within PP_0837 at 974.972 kb on + strand, within PP_0837 at 974.972 kb on + strand, within PP_0837 at 974.973 kb on - strand, within PP_0837 at 974.973 kb on - strand, within PP_0837 at 975.044 kb on + strand, within PP_0837 at 975.045 kb on - strand, within PP_0837 at 975.045 kb on - strand, within PP_0837 at 975.063 kb on + strand, within PP_0837 at 975.064 kb on - strand, within PP_0837 at 975.195 kb on + strand at 975.217 kb on + strand at 975.217 kb on + strand at 975.217 kb on + strand at 975.218 kb on - strand at 975.247 kb on + strand at 975.321 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction pH 8 remove 974,488 + +0.3 974,591 + +0.9 974,592 - +1.9 974,615 - -0.7 974,656 - -1.7 974,656 - -0.9 974,656 - -1.0 974,681 + PP_0837 0.13 -0.6 974,681 + PP_0837 0.13 +0.9 974,682 - PP_0837 0.13 -2.1 974,682 - PP_0837 0.13 -2.3 974,827 + PP_0837 0.40 +0.9 974,863 + PP_0837 0.47 -1.1 974,968 + PP_0837 0.66 -2.1 974,968 + PP_0837 0.66 +2.2 974,968 + PP_0837 0.66 +0.5 974,972 + PP_0837 0.67 -1.4 974,972 + PP_0837 0.67 -0.9 974,973 - PP_0837 0.67 -1.4 974,973 - PP_0837 0.67 -0.4 975,044 + PP_0837 0.80 +1.3 975,045 - PP_0837 0.80 -0.1 975,045 - PP_0837 0.80 -0.6 975,063 + PP_0837 0.84 -0.6 975,064 - PP_0837 0.84 -1.8 975,195 + -0.9 975,217 + -0.2 975,217 + +3.7 975,217 + -2.1 975,218 - +0.8 975,247 + +1.2 975,321 + +0.9
Or see this region's nucleotide sequence