Strain Fitness in Pseudomonas putida KT2440 around PP_0788

Experiment: pH 8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0787 and PP_0788 are separated by 243 nucleotidesPP_0788 and PP_0789 are separated by 88 nucleotidesPP_0789 and PP_0790 overlap by 4 nucleotides PP_0787: PP_0787 - quinolinate phosphoribosyltransferase (decarboxylating) monomer, at 902,650 to 903,498 _0787 PP_0788: PP_0788 - conserved protein of unknown function, at 903,742 to 905,901 _0788 PP_0789: PP_0789 - N-acetyl-anhydromuramyl-L-alanine-amidase, at 905,990 to 906,562 _0789 PP_0790: PP_0790 - Inner membrane protein AmpE, at 906,559 to 907,389 _0790 Position (kb) 903 904 905 906Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 902.800 kb on - strand, within PP_0787at 903.008 kb on + strand, within PP_0787at 903.009 kb on - strand, within PP_0787at 903.016 kb on + strand, within PP_0787at 903.016 kb on + strand, within PP_0787at 903.017 kb on - strand, within PP_0787at 903.487 kb on + strandat 903.515 kb on + strandat 903.515 kb on + strandat 903.515 kb on + strandat 903.515 kb on + strandat 903.515 kb on + strandat 903.516 kb on - strandat 903.516 kb on - strandat 903.516 kb on - strandat 903.516 kb on - strandat 903.530 kb on - strandat 903.531 kb on + strandat 903.531 kb on + strandat 903.532 kb on - strandat 903.551 kb on + strandat 903.551 kb on + strandat 903.551 kb on + strandat 903.552 kb on - strandat 903.552 kb on - strandat 903.552 kb on - strandat 903.552 kb on - strandat 903.640 kb on + strandat 903.640 kb on + strandat 903.640 kb on + strandat 903.640 kb on + strandat 903.640 kb on + strandat 903.641 kb on - strandat 903.641 kb on - strandat 903.641 kb on - strandat 903.644 kb on + strandat 903.645 kb on - strandat 903.645 kb on - strandat 903.675 kb on + strandat 903.687 kb on + strandat 903.799 kb on - strandat 903.799 kb on - strandat 903.953 kb on - strandat 903.953 kb on - strandat 903.953 kb on - strandat 904.014 kb on + strand, within PP_0788at 904.015 kb on - strand, within PP_0788at 904.015 kb on - strand, within PP_0788at 904.213 kb on + strand, within PP_0788at 904.214 kb on - strand, within PP_0788at 904.255 kb on + strand, within PP_0788at 904.255 kb on + strand, within PP_0788at 904.275 kb on + strand, within PP_0788at 904.275 kb on + strand, within PP_0788at 904.330 kb on + strand, within PP_0788at 904.331 kb on - strand, within PP_0788at 904.331 kb on - strand, within PP_0788at 904.357 kb on + strand, within PP_0788at 904.358 kb on - strand, within PP_0788at 904.395 kb on - strand, within PP_0788at 904.640 kb on - strand, within PP_0788at 904.640 kb on - strand, within PP_0788at 904.640 kb on - strand, within PP_0788at 904.640 kb on - strand, within PP_0788at 904.640 kb on - strand, within PP_0788at 904.640 kb on - strand, within PP_0788at 904.654 kb on + strand, within PP_0788at 904.655 kb on - strand, within PP_0788at 904.725 kb on + strand, within PP_0788at 904.848 kb on + strand, within PP_0788at 904.849 kb on - strand, within PP_0788at 904.872 kb on - strand, within PP_0788at 904.872 kb on - strand, within PP_0788at 904.872 kb on - strand, within PP_0788at 904.998 kb on - strand, within PP_0788at 904.998 kb on - strand, within PP_0788at 905.004 kb on + strand, within PP_0788at 905.104 kb on - strand, within PP_0788at 905.261 kb on + strand, within PP_0788at 905.261 kb on + strand, within PP_0788at 905.261 kb on + strand, within PP_0788at 905.429 kb on + strand, within PP_0788at 905.430 kb on - strand, within PP_0788at 905.430 kb on - strand, within PP_0788at 905.430 kb on - strand, within PP_0788at 905.430 kb on - strand, within PP_0788at 905.502 kb on + strand, within PP_0788at 905.503 kb on - strand, within PP_0788at 905.553 kb on - strand, within PP_0788at 905.868 kb on - strandat 905.900 kb on - strandat 905.900 kb on - strandat 905.912 kb on + strandat 905.912 kb on + strandat 905.912 kb on + strandat 905.913 kb on - strandat 905.913 kb on - strandat 905.913 kb on - strandat 905.913 kb on - strandat 905.951 kb on + strandat 906.002 kb on + strandat 906.002 kb on + strandat 906.002 kb on + strandat 906.003 kb on - strandat 906.188 kb on + strand, within PP_0789at 906.188 kb on + strand, within PP_0789at 906.325 kb on + strand, within PP_0789at 906.326 kb on - strand, within PP_0789at 906.374 kb on + strand, within PP_0789at 906.376 kb on + strand, within PP_0789at 906.376 kb on + strand, within PP_0789at 906.377 kb on - strand, within PP_0789at 906.377 kb on - strand, within PP_0789at 906.643 kb on - strand, within PP_0790at 906.643 kb on - strand, within PP_0790at 906.766 kb on + strand, within PP_0790at 906.766 kb on + strand, within PP_0790at 906.767 kb on - strand, within PP_0790at 906.767 kb on - strand, within PP_0790at 906.809 kb on - strand, within PP_0790

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Per-strain Table

Position Strand Gene LocusTag Fraction pH 8
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902,800 - PP_0787 0.18 -4.4
903,008 + PP_0787 0.42 -4.0
903,009 - PP_0787 0.42 -4.2
903,016 + PP_0787 0.43 +0.9
903,016 + PP_0787 0.43 +0.9
903,017 - PP_0787 0.43 -2.8
903,487 + -2.1
903,515 + -1.0
903,515 + -0.6
903,515 + +0.5
903,515 + -0.6
903,515 + -1.3
903,516 - +0.6
903,516 - -2.7
903,516 - +0.9
903,516 - +0.1
903,530 - -1.8
903,531 + +3.7
903,531 + -1.0
903,532 - -3.1
903,551 + +2.2
903,551 + +1.6
903,551 + +2.9
903,552 - +1.9
903,552 - +0.1
903,552 - -2.0
903,552 - -1.3
903,640 + +1.5
903,640 + +0.9
903,640 + +0.9
903,640 + +1.5
903,640 + +0.4
903,641 - +1.9
903,641 - -1.1
903,641 - -3.2
903,644 + -1.5
903,645 - -2.3
903,645 - +0.7
903,675 + +0.9
903,687 + +1.9
903,799 - -0.4
903,799 - +1.9
903,953 - +0.4
903,953 - +1.4
903,953 - -0.0
904,014 + PP_0788 0.13 -0.9
904,015 - PP_0788 0.13 +0.9
904,015 - PP_0788 0.13 -0.2
904,213 + PP_0788 0.22 -2.3
904,214 - PP_0788 0.22 -0.7
904,255 + PP_0788 0.24 -0.5
904,255 + PP_0788 0.24 -2.0
904,275 + PP_0788 0.25 +0.3
904,275 + PP_0788 0.25 -2.7
904,330 + PP_0788 0.27 -0.4
904,331 - PP_0788 0.27 +0.4
904,331 - PP_0788 0.27 +0.4
904,357 + PP_0788 0.28 -0.8
904,358 - PP_0788 0.29 +1.0
904,395 - PP_0788 0.30 +0.9
904,640 - PP_0788 0.42 -0.8
904,640 - PP_0788 0.42 +0.1
904,640 - PP_0788 0.42 -3.7
904,640 - PP_0788 0.42 -1.2
904,640 - PP_0788 0.42 -2.5
904,640 - PP_0788 0.42 +0.4
904,654 + PP_0788 0.42 -0.4
904,655 - PP_0788 0.42 -2.7
904,725 + PP_0788 0.46 +0.6
904,848 + PP_0788 0.51 -2.8
904,849 - PP_0788 0.51 +0.4
904,872 - PP_0788 0.52 +0.9
904,872 - PP_0788 0.52 +0.0
904,872 - PP_0788 0.52 -2.8
904,998 - PP_0788 0.58 -0.5
904,998 - PP_0788 0.58 -0.3
905,004 + PP_0788 0.58 +3.2
905,104 - PP_0788 0.63 -1.4
905,261 + PP_0788 0.70 -1.0
905,261 + PP_0788 0.70 -0.7
905,261 + PP_0788 0.70 +0.9
905,429 + PP_0788 0.78 +0.6
905,430 - PP_0788 0.78 -1.6
905,430 - PP_0788 0.78 -1.5
905,430 - PP_0788 0.78 -0.7
905,430 - PP_0788 0.78 -1.1
905,502 + PP_0788 0.81 +0.9
905,503 - PP_0788 0.82 +0.3
905,553 - PP_0788 0.84 -0.1
905,868 - -1.0
905,900 - -1.0
905,900 - +0.9
905,912 + -0.6
905,912 + +0.8
905,912 + +0.1
905,913 - +0.3
905,913 - +0.9
905,913 - -0.1
905,913 - +2.1
905,951 + -1.5
906,002 + -0.0
906,002 + -0.1
906,002 + -0.2
906,003 - -0.1
906,188 + PP_0789 0.35 -1.2
906,188 + PP_0789 0.35 -1.5
906,325 + PP_0789 0.58 -3.5
906,326 - PP_0789 0.59 -0.1
906,374 + PP_0789 0.67 +0.0
906,376 + PP_0789 0.67 -0.1
906,376 + PP_0789 0.67 -0.4
906,377 - PP_0789 0.68 -1.0
906,377 - PP_0789 0.68 +0.4
906,643 - PP_0790 0.10 -0.2
906,643 - PP_0790 0.10 +1.4
906,766 + PP_0790 0.25 -0.7
906,766 + PP_0790 0.25 +0.6
906,767 - PP_0790 0.25 -0.7
906,767 - PP_0790 0.25 +1.1
906,809 - PP_0790 0.30 -1.0

Or see this region's nucleotide sequence