Strain Fitness in Pseudomonas putida KT2440 around PP_0717

Experiment: pH 8

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_0716 and PP_0717 overlap by 11 nucleotidesPP_0717 and PP_0718 are separated by 18 nucleotides PP_0716: PP_0716 - HlyD family secretion protein, at 832,238 to 833,335 _0716 PP_0717: PP_0717 - conserved membrane protein of unknown function, DUF2955 family, at 833,325 to 834,347 _0717 PP_0718: PP_0718 - Sulfate transporter, at 834,366 to 836,078 _0718 Position (kb) 833 834 835Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 832.328 kb on + strandat 832.328 kb on + strandat 832.329 kb on - strandat 832.348 kb on + strand, within PP_0716at 832.348 kb on + strand, within PP_0716at 832.348 kb on + strand, within PP_0716at 832.349 kb on - strand, within PP_0716at 832.349 kb on - strand, within PP_0716at 832.355 kb on + strand, within PP_0716at 832.382 kb on + strand, within PP_0716at 832.382 kb on + strand, within PP_0716at 832.382 kb on + strand, within PP_0716at 832.382 kb on + strand, within PP_0716at 832.383 kb on - strand, within PP_0716at 832.383 kb on - strand, within PP_0716at 832.383 kb on - strand, within PP_0716at 832.567 kb on + strand, within PP_0716at 832.853 kb on - strand, within PP_0716at 832.913 kb on + strand, within PP_0716at 832.913 kb on + strand, within PP_0716at 832.913 kb on + strand, within PP_0716at 832.914 kb on - strand, within PP_0716at 832.928 kb on - strand, within PP_0716at 832.951 kb on + strand, within PP_0716at 832.969 kb on - strand, within PP_0716at 832.969 kb on - strand, within PP_0716at 833.068 kb on + strand, within PP_0716at 833.069 kb on - strand, within PP_0716at 833.069 kb on - strand, within PP_0716at 833.069 kb on - strand, within PP_0716at 833.069 kb on - strand, within PP_0716at 833.070 kb on + strand, within PP_0716at 833.071 kb on - strand, within PP_0716at 833.071 kb on - strand, within PP_0716at 833.071 kb on - strand, within PP_0716at 833.141 kb on - strand, within PP_0716at 833.183 kb on - strand, within PP_0716at 833.324 kb on + strandat 833.325 kb on - strandat 833.325 kb on - strandat 833.579 kb on - strand, within PP_0717at 833.613 kb on + strand, within PP_0717at 833.774 kb on + strand, within PP_0717at 833.774 kb on + strand, within PP_0717at 833.774 kb on + strand, within PP_0717at 833.774 kb on + strand, within PP_0717at 833.774 kb on + strand, within PP_0717at 833.774 kb on + strand, within PP_0717at 833.774 kb on + strand, within PP_0717at 833.774 kb on + strand, within PP_0717at 833.775 kb on - strand, within PP_0717at 833.775 kb on - strand, within PP_0717at 833.775 kb on - strand, within PP_0717at 833.775 kb on - strand, within PP_0717at 833.775 kb on - strand, within PP_0717at 833.775 kb on - strand, within PP_0717at 833.916 kb on + strand, within PP_0717at 833.916 kb on + strand, within PP_0717at 833.917 kb on - strand, within PP_0717at 833.917 kb on - strand, within PP_0717at 833.917 kb on - strand, within PP_0717at 833.917 kb on - strand, within PP_0717at 834.088 kb on + strand, within PP_0717at 834.123 kb on + strand, within PP_0717at 834.123 kb on + strand, within PP_0717at 834.124 kb on - strand, within PP_0717at 834.157 kb on - strand, within PP_0717at 834.189 kb on + strand, within PP_0717at 834.234 kb on + strand, within PP_0717at 834.234 kb on + strand, within PP_0717at 834.234 kb on + strand, within PP_0717at 834.235 kb on - strand, within PP_0717at 834.235 kb on - strand, within PP_0717at 834.235 kb on - strand, within PP_0717at 834.235 kb on - strand, within PP_0717at 834.255 kb on - strandat 834.255 kb on - strandat 834.283 kb on - strandat 834.400 kb on + strandat 834.400 kb on + strandat 834.400 kb on + strandat 834.401 kb on - strandat 834.449 kb on + strandat 834.449 kb on + strandat 834.449 kb on + strandat 834.450 kb on - strandat 834.581 kb on + strand, within PP_0718at 834.582 kb on - strand, within PP_0718at 834.750 kb on + strand, within PP_0718at 834.750 kb on + strand, within PP_0718at 834.751 kb on - strand, within PP_0718at 834.751 kb on - strand, within PP_0718at 834.796 kb on + strand, within PP_0718at 835.007 kb on + strand, within PP_0718at 835.008 kb on - strand, within PP_0718at 835.234 kb on + strand, within PP_0718at 835.235 kb on - strand, within PP_0718at 835.235 kb on - strand, within PP_0718at 835.296 kb on + strand, within PP_0718at 835.297 kb on - strand, within PP_0718at 835.297 kb on - strand, within PP_0718

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction pH 8
remove
832,328 + -0.0
832,328 + -0.6
832,329 - -2.9
832,348 + PP_0716 0.10 +1.8
832,348 + PP_0716 0.10 -0.2
832,348 + PP_0716 0.10 +0.5
832,349 - PP_0716 0.10 -0.2
832,349 - PP_0716 0.10 -3.6
832,355 + PP_0716 0.11 -0.3
832,382 + PP_0716 0.13 -1.1
832,382 + PP_0716 0.13 -2.2
832,382 + PP_0716 0.13 -1.3
832,382 + PP_0716 0.13 +0.1
832,383 - PP_0716 0.13 -0.8
832,383 - PP_0716 0.13 +0.6
832,383 - PP_0716 0.13 -2.7
832,567 + PP_0716 0.30 -0.6
832,853 - PP_0716 0.56 +3.4
832,913 + PP_0716 0.61 +0.5
832,913 + PP_0716 0.61 +3.4
832,913 + PP_0716 0.61 -1.3
832,914 - PP_0716 0.62 +0.1
832,928 - PP_0716 0.63 -0.0
832,951 + PP_0716 0.65 -2.9
832,969 - PP_0716 0.67 +0.4
832,969 - PP_0716 0.67 -3.6
833,068 + PP_0716 0.76 -1.2
833,069 - PP_0716 0.76 -2.1
833,069 - PP_0716 0.76 +2.1
833,069 - PP_0716 0.76 -0.4
833,069 - PP_0716 0.76 +1.0
833,070 + PP_0716 0.76 +3.8
833,071 - PP_0716 0.76 +1.2
833,071 - PP_0716 0.76 +1.6
833,071 - PP_0716 0.76 -0.7
833,141 - PP_0716 0.82 -0.4
833,183 - PP_0716 0.86 -1.3
833,324 + -0.8
833,325 - +0.2
833,325 - +2.8
833,579 - PP_0717 0.25 +0.3
833,613 + PP_0717 0.28 -1.8
833,774 + PP_0717 0.44 -2.9
833,774 + PP_0717 0.44 -0.5
833,774 + PP_0717 0.44 +0.1
833,774 + PP_0717 0.44 -2.5
833,774 + PP_0717 0.44 -0.5
833,774 + PP_0717 0.44 -0.9
833,774 + PP_0717 0.44 +0.1
833,774 + PP_0717 0.44 +0.0
833,775 - PP_0717 0.44 -1.8
833,775 - PP_0717 0.44 +1.0
833,775 - PP_0717 0.44 +2.9
833,775 - PP_0717 0.44 -0.6
833,775 - PP_0717 0.44 -2.1
833,775 - PP_0717 0.44 +0.7
833,916 + PP_0717 0.58 -0.3
833,916 + PP_0717 0.58 +0.8
833,917 - PP_0717 0.58 +0.8
833,917 - PP_0717 0.58 -1.8
833,917 - PP_0717 0.58 -0.9
833,917 - PP_0717 0.58 -1.3
834,088 + PP_0717 0.75 +0.9
834,123 + PP_0717 0.78 -3.0
834,123 + PP_0717 0.78 -1.5
834,124 - PP_0717 0.78 -1.1
834,157 - PP_0717 0.81 -0.8
834,189 + PP_0717 0.84 +0.2
834,234 + PP_0717 0.89 -0.8
834,234 + PP_0717 0.89 -0.4
834,234 + PP_0717 0.89 +0.8
834,235 - PP_0717 0.89 -0.4
834,235 - PP_0717 0.89 +0.8
834,235 - PP_0717 0.89 +2.6
834,235 - PP_0717 0.89 +0.1
834,255 - +0.2
834,255 - +0.6
834,283 - -0.9
834,400 + +0.6
834,400 + +0.4
834,400 + -1.2
834,401 - +0.2
834,449 + -0.9
834,449 + +1.7
834,449 + +0.5
834,450 - +0.0
834,581 + PP_0718 0.13 +0.3
834,582 - PP_0718 0.13 -0.5
834,750 + PP_0718 0.22 +1.0
834,750 + PP_0718 0.22 -0.6
834,751 - PP_0718 0.22 -2.8
834,751 - PP_0718 0.22 -0.2
834,796 + PP_0718 0.25 +0.2
835,007 + PP_0718 0.37 -0.2
835,008 - PP_0718 0.37 -1.1
835,234 + PP_0718 0.51 -0.8
835,235 - PP_0718 0.51 -0.4
835,235 - PP_0718 0.51 +1.1
835,296 + PP_0718 0.54 +2.4
835,297 - PP_0718 0.54 +0.8
835,297 - PP_0718 0.54 +0.5

Or see this region's nucleotide sequence