Strain Fitness in Pseudomonas putida KT2440 around PP_0676

Experiment: pH 8

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_0675 and PP_0676 are separated by 59 nucleotidesPP_0676 and PP_0677 are separated by 67 nucleotidesPP_0677 and PP_0678 are separated by 101 nucleotides PP_0675: PP_0675 - glutamate dehydrogenase, NADP-dependent, at 788,763 to 790,112 _0675 PP_0676: PP_0676 - putative Transcription elongation factor, at 790,172 to 790,669 _0676 PP_0677: PP_0677 - putative Lipoprotein, at 790,737 to 791,093 _0677 PP_0678: PP_0678 - conserved exported protein of unknown function, at 791,195 to 793,048 _0678 Position (kb) 790 791Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 789.228 kb on + strand, within PP_0675at 789.256 kb on + strand, within PP_0675at 789.257 kb on - strand, within PP_0675at 789.313 kb on - strand, within PP_0675at 789.313 kb on - strand, within PP_0675at 789.313 kb on - strand, within PP_0675at 789.367 kb on - strand, within PP_0675at 789.414 kb on + strand, within PP_0675at 789.415 kb on - strand, within PP_0675at 789.452 kb on + strand, within PP_0675at 789.501 kb on + strand, within PP_0675at 789.502 kb on - strand, within PP_0675at 789.502 kb on - strand, within PP_0675at 789.502 kb on - strand, within PP_0675at 789.512 kb on + strand, within PP_0675at 789.512 kb on + strand, within PP_0675at 789.513 kb on - strand, within PP_0675at 789.563 kb on + strand, within PP_0675at 789.563 kb on + strand, within PP_0675at 789.564 kb on - strand, within PP_0675at 789.564 kb on - strand, within PP_0675at 789.570 kb on + strand, within PP_0675at 789.571 kb on - strand, within PP_0675at 789.571 kb on - strand, within PP_0675at 789.642 kb on - strand, within PP_0675at 789.642 kb on - strand, within PP_0675at 789.777 kb on - strand, within PP_0675at 789.785 kb on + strand, within PP_0675at 789.786 kb on - strand, within PP_0675at 789.786 kb on - strand, within PP_0675at 789.818 kb on + strand, within PP_0675at 789.836 kb on + strand, within PP_0675at 789.837 kb on - strand, within PP_0675at 790.012 kb on - strandat 790.041 kb on + strandat 790.042 kb on - strandat 790.042 kb on - strandat 790.203 kb on - strandat 790.203 kb on - strandat 790.391 kb on + strand, within PP_0676at 790.399 kb on + strand, within PP_0676at 790.452 kb on + strand, within PP_0676at 790.584 kb on + strand, within PP_0676at 790.584 kb on + strand, within PP_0676at 790.585 kb on - strand, within PP_0676at 790.585 kb on - strand, within PP_0676at 790.585 kb on - strand, within PP_0676at 790.585 kb on - strand, within PP_0676at 790.585 kb on - strand, within PP_0676at 790.671 kb on + strandat 790.671 kb on + strandat 790.671 kb on + strandat 790.672 kb on - strandat 790.672 kb on - strandat 790.672 kb on - strandat 790.672 kb on - strandat 790.672 kb on - strandat 790.672 kb on - strandat 790.750 kb on + strandat 790.751 kb on - strandat 790.823 kb on - strand, within PP_0677at 790.892 kb on - strand, within PP_0677at 790.910 kb on - strand, within PP_0677at 790.917 kb on + strand, within PP_0677at 791.093 kb on + strandat 791.093 kb on + strandat 791.128 kb on + strandat 791.148 kb on - strandat 791.199 kb on + strandat 791.199 kb on + strandat 791.200 kb on - strandat 791.205 kb on + strandat 791.206 kb on - strandat 791.206 kb on - strandat 791.206 kb on - strandat 791.321 kb on + strandat 791.321 kb on + strandat 791.322 kb on - strandat 791.322 kb on - strandat 791.352 kb on + strandat 791.352 kb on + strandat 791.352 kb on + strandat 791.353 kb on - strandat 791.353 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction pH 8
remove
789,228 + PP_0675 0.34 -1.1
789,256 + PP_0675 0.37 +0.8
789,257 - PP_0675 0.37 +2.8
789,313 - PP_0675 0.41 +0.8
789,313 - PP_0675 0.41 +1.0
789,313 - PP_0675 0.41 +0.2
789,367 - PP_0675 0.45 +2.4
789,414 + PP_0675 0.48 +0.8
789,415 - PP_0675 0.48 -0.9
789,452 + PP_0675 0.51 -1.4
789,501 + PP_0675 0.55 -2.5
789,502 - PP_0675 0.55 +1.0
789,502 - PP_0675 0.55 +2.4
789,502 - PP_0675 0.55 +1.3
789,512 + PP_0675 0.55 -3.3
789,512 + PP_0675 0.55 +1.4
789,513 - PP_0675 0.56 +4.0
789,563 + PP_0675 0.59 +1.2
789,563 + PP_0675 0.59 -0.4
789,564 - PP_0675 0.59 +2.2
789,564 - PP_0675 0.59 -0.3
789,570 + PP_0675 0.60 -2.1
789,571 - PP_0675 0.60 -0.0
789,571 - PP_0675 0.60 -1.2
789,642 - PP_0675 0.65 +0.6
789,642 - PP_0675 0.65 -1.5
789,777 - PP_0675 0.75 -1.2
789,785 + PP_0675 0.76 +0.2
789,786 - PP_0675 0.76 -1.4
789,786 - PP_0675 0.76 +1.3
789,818 + PP_0675 0.78 +0.3
789,836 + PP_0675 0.79 +1.3
789,837 - PP_0675 0.80 -2.4
790,012 - +0.3
790,041 + +1.0
790,042 - +3.6
790,042 - +0.8
790,203 - +1.8
790,203 - -2.5
790,391 + PP_0676 0.44 -0.7
790,399 + PP_0676 0.46 +3.6
790,452 + PP_0676 0.56 +1.9
790,584 + PP_0676 0.83 -0.6
790,584 + PP_0676 0.83 +0.5
790,585 - PP_0676 0.83 +0.1
790,585 - PP_0676 0.83 +1.2
790,585 - PP_0676 0.83 -0.4
790,585 - PP_0676 0.83 +0.8
790,585 - PP_0676 0.83 +1.6
790,671 + -2.7
790,671 + +1.6
790,671 + -0.2
790,672 - +0.0
790,672 - -1.5
790,672 - -2.7
790,672 - -0.7
790,672 - -3.7
790,672 - -1.5
790,750 + -1.4
790,751 - -0.9
790,823 - PP_0677 0.24 +1.2
790,892 - PP_0677 0.43 -0.2
790,910 - PP_0677 0.48 -3.0
790,917 + PP_0677 0.50 +0.7
791,093 + +0.3
791,093 + -1.8
791,128 + -1.2
791,148 - +0.1
791,199 + +0.7
791,199 + -2.4
791,200 - +0.8
791,205 + +1.2
791,206 - -0.4
791,206 - -0.7
791,206 - +0.1
791,321 + +1.1
791,321 + +0.8
791,322 - -2.2
791,322 - -1.7
791,352 + +0.5
791,352 + +1.0
791,352 + +1.1
791,353 - -2.5
791,353 - -2.4

Or see this region's nucleotide sequence