Strain Fitness in Pseudomonas putida KT2440 around PP_0650

Experiment: pH 8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0648 and PP_0649 are separated by 87 nucleotidesPP_0649 and PP_0650 are separated by 27 nucleotidesPP_0650 and PP_0651 are separated by 108 nucleotides PP_0648: PP_0648 - conserved protein of unknown function, at 757,379 to 757,834 _0648 PP_0649: PP_0649 - MutT/nudix family protein, at 757,922 to 758,332 _0649 PP_0650: PP_0650 - conserved protein of unknown function, at 758,360 to 758,470 _0650 PP_0651: PP_0651 - Acetyltransferase, GNAT family, at 758,579 to 759,028 _0651 Position (kb) 758 759Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 757.379 kb on - strandat 757.412 kb on + strandat 757.440 kb on + strand, within PP_0648at 757.539 kb on + strand, within PP_0648at 757.540 kb on - strand, within PP_0648at 757.594 kb on + strand, within PP_0648at 757.595 kb on - strand, within PP_0648at 757.606 kb on + strand, within PP_0648at 757.606 kb on + strand, within PP_0648at 757.607 kb on - strand, within PP_0648at 757.607 kb on - strand, within PP_0648at 757.607 kb on - strand, within PP_0648at 757.607 kb on - strand, within PP_0648at 757.614 kb on - strand, within PP_0648at 757.614 kb on - strand, within PP_0648at 757.614 kb on - strand, within PP_0648at 757.633 kb on + strand, within PP_0648at 757.634 kb on - strand, within PP_0648at 757.637 kb on + strand, within PP_0648at 757.637 kb on + strand, within PP_0648at 757.637 kb on + strand, within PP_0648at 757.637 kb on + strand, within PP_0648at 757.637 kb on + strand, within PP_0648at 757.637 kb on + strand, within PP_0648at 757.637 kb on + strand, within PP_0648at 757.638 kb on - strand, within PP_0648at 757.638 kb on - strand, within PP_0648at 757.638 kb on - strand, within PP_0648at 757.638 kb on - strand, within PP_0648at 757.638 kb on - strand, within PP_0648at 757.638 kb on - strand, within PP_0648at 757.638 kb on - strand, within PP_0648at 757.638 kb on - strand, within PP_0648at 757.638 kb on - strand, within PP_0648at 757.639 kb on + strand, within PP_0648at 757.639 kb on + strand, within PP_0648at 757.640 kb on - strand, within PP_0648at 757.640 kb on - strand, within PP_0648at 757.641 kb on - strand, within PP_0648at 757.673 kb on + strand, within PP_0648at 757.674 kb on - strand, within PP_0648at 757.674 kb on - strand, within PP_0648at 757.693 kb on + strand, within PP_0648at 757.756 kb on + strand, within PP_0648at 757.756 kb on + strand, within PP_0648at 757.757 kb on - strand, within PP_0648at 757.757 kb on - strand, within PP_0648at 757.767 kb on + strand, within PP_0648at 757.767 kb on + strand, within PP_0648at 757.803 kb on - strandat 757.838 kb on + strandat 757.880 kb on + strandat 757.880 kb on + strandat 757.880 kb on + strandat 757.900 kb on + strandat 757.900 kb on + strandat 757.900 kb on + strandat 757.947 kb on + strandat 757.947 kb on + strandat 757.948 kb on - strandat 757.948 kb on - strandat 757.948 kb on - strandat 757.948 kb on - strandat 757.948 kb on - strandat 757.980 kb on + strand, within PP_0649at 757.998 kb on + strand, within PP_0649at 757.998 kb on + strand, within PP_0649at 757.999 kb on - strand, within PP_0649at 758.087 kb on - strand, within PP_0649at 758.087 kb on - strand, within PP_0649at 758.189 kb on - strand, within PP_0649at 758.189 kb on - strand, within PP_0649at 758.306 kb on - strandat 758.330 kb on + strandat 758.331 kb on - strandat 758.331 kb on - strandat 758.331 kb on - strandat 758.331 kb on - strandat 758.340 kb on + strandat 758.340 kb on + strandat 758.341 kb on - strandat 758.341 kb on - strandat 758.358 kb on - strandat 758.384 kb on + strand, within PP_0650at 758.384 kb on + strand, within PP_0650at 758.385 kb on - strand, within PP_0650at 758.385 kb on - strand, within PP_0650at 758.387 kb on + strand, within PP_0650at 758.387 kb on + strand, within PP_0650at 758.388 kb on - strand, within PP_0650at 758.388 kb on - strand, within PP_0650at 758.388 kb on - strand, within PP_0650at 758.388 kb on - strand, within PP_0650at 758.446 kb on - strand, within PP_0650at 758.446 kb on - strand, within PP_0650at 758.451 kb on + strand, within PP_0650at 758.451 kb on + strand, within PP_0650at 758.451 kb on + strand, within PP_0650at 758.452 kb on - strand, within PP_0650at 758.452 kb on - strand, within PP_0650at 758.486 kb on + strandat 758.486 kb on + strandat 758.486 kb on + strandat 758.514 kb on + strandat 758.514 kb on + strandat 758.515 kb on - strandat 758.538 kb on + strandat 758.539 kb on - strandat 758.539 kb on - strandat 758.539 kb on - strandat 758.560 kb on - strandat 758.562 kb on - strandat 758.626 kb on - strand, within PP_0651at 758.626 kb on - strand, within PP_0651at 758.638 kb on + strand, within PP_0651at 758.638 kb on + strand, within PP_0651at 758.639 kb on - strand, within PP_0651at 758.640 kb on + strand, within PP_0651at 758.640 kb on + strand, within PP_0651at 758.737 kb on + strand, within PP_0651at 758.738 kb on - strandat 758.757 kb on + strand, within PP_0651at 758.757 kb on + strand, within PP_0651at 758.758 kb on - strand, within PP_0651at 758.758 kb on - strand, within PP_0651at 758.763 kb on + strand, within PP_0651at 758.764 kb on - strand, within PP_0651at 758.881 kb on + strand, within PP_0651at 758.881 kb on + strand, within PP_0651at 758.881 kb on + strand, within PP_0651at 758.883 kb on + strand, within PP_0651at 758.883 kb on + strand, within PP_0651at 758.883 kb on + strand, within PP_0651at 758.884 kb on - strand, within PP_0651at 758.913 kb on + strand, within PP_0651at 758.913 kb on + strand, within PP_0651at 758.913 kb on + strand, within PP_0651at 758.913 kb on + strand, within PP_0651at 758.913 kb on + strand, within PP_0651at 758.914 kb on - strand, within PP_0651at 758.914 kb on - strand, within PP_0651at 758.914 kb on - strand, within PP_0651at 758.914 kb on - strand, within PP_0651at 758.914 kb on - strand, within PP_0651at 758.948 kb on + strand, within PP_0651at 758.948 kb on + strand, within PP_0651at 759.011 kb on - strandat 759.026 kb on + strandat 759.026 kb on + strandat 759.027 kb on - strandat 759.042 kb on + strandat 759.042 kb on + strandat 759.047 kb on + strandat 759.048 kb on - strandat 759.048 kb on - strandat 759.070 kb on - strandat 759.070 kb on - strandat 759.092 kb on + strandat 759.092 kb on + strandat 759.092 kb on + strandat 759.092 kb on + strandat 759.093 kb on - strandat 759.093 kb on - strandat 759.093 kb on - strandat 759.093 kb on - strandat 759.096 kb on + strandat 759.096 kb on + strandat 759.096 kb on + strandat 759.097 kb on - strandat 759.097 kb on - strandat 759.118 kb on + strandat 759.118 kb on + strandat 759.119 kb on - strandat 759.119 kb on - strandat 759.202 kb on + strandat 759.226 kb on + strandat 759.276 kb on + strandat 759.277 kb on - strandat 759.288 kb on + strandat 759.288 kb on + strandat 759.288 kb on + strandat 759.289 kb on - strandat 759.294 kb on + strandat 759.294 kb on + strandat 759.295 kb on - strandat 759.310 kb on + strandat 759.310 kb on + strandat 759.310 kb on + strandat 759.310 kb on + strandat 759.311 kb on - strandat 759.313 kb on + strandat 759.313 kb on + strandat 759.374 kb on + strandat 759.375 kb on - strandat 759.375 kb on - strandat 759.396 kb on + strandat 759.419 kb on + strandat 759.434 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pH 8
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757,379 - -0.3
757,412 + +0.8
757,440 + PP_0648 0.13 +0.7
757,539 + PP_0648 0.35 +1.1
757,540 - PP_0648 0.35 -0.1
757,594 + PP_0648 0.47 +2.8
757,595 - PP_0648 0.47 -1.3
757,606 + PP_0648 0.50 -0.5
757,606 + PP_0648 0.50 +1.1
757,607 - PP_0648 0.50 +0.8
757,607 - PP_0648 0.50 -3.4
757,607 - PP_0648 0.50 +1.1
757,607 - PP_0648 0.50 -0.3
757,614 - PP_0648 0.52 +1.3
757,614 - PP_0648 0.52 -1.2
757,614 - PP_0648 0.52 -0.5
757,633 + PP_0648 0.56 +1.5
757,634 - PP_0648 0.56 -0.5
757,637 + PP_0648 0.57 -0.6
757,637 + PP_0648 0.57 -0.5
757,637 + PP_0648 0.57 -0.1
757,637 + PP_0648 0.57 -2.0
757,637 + PP_0648 0.57 +0.5
757,637 + PP_0648 0.57 -2.3
757,637 + PP_0648 0.57 +0.8
757,638 - PP_0648 0.57 +0.3
757,638 - PP_0648 0.57 +0.1
757,638 - PP_0648 0.57 -0.0
757,638 - PP_0648 0.57 -0.6
757,638 - PP_0648 0.57 -1.2
757,638 - PP_0648 0.57 +0.3
757,638 - PP_0648 0.57 +1.4
757,638 - PP_0648 0.57 -3.0
757,638 - PP_0648 0.57 +1.0
757,639 + PP_0648 0.57 +2.0
757,639 + PP_0648 0.57 +2.0
757,640 - PP_0648 0.57 +0.2
757,640 - PP_0648 0.57 +0.8
757,641 - PP_0648 0.57 -1.1
757,673 + PP_0648 0.64 +1.1
757,674 - PP_0648 0.65 -2.5
757,674 - PP_0648 0.65 +0.1
757,693 + PP_0648 0.69 +0.7
757,756 + PP_0648 0.83 +1.8
757,756 + PP_0648 0.83 +0.4
757,757 - PP_0648 0.83 +2.7
757,757 - PP_0648 0.83 +1.4
757,767 + PP_0648 0.85 -0.1
757,767 + PP_0648 0.85 -2.7
757,803 - +1.8
757,838 + +0.8
757,880 + -1.9
757,880 + -0.6
757,880 + +3.6
757,900 + -0.2
757,900 + +1.4
757,900 + +1.5
757,947 + -0.4
757,947 + +0.3
757,948 - -0.2
757,948 - +0.3
757,948 - -1.8
757,948 - -2.8
757,948 - -0.1
757,980 + PP_0649 0.14 +0.3
757,998 + PP_0649 0.18 +0.9
757,998 + PP_0649 0.18 +0.7
757,999 - PP_0649 0.19 +1.7
758,087 - PP_0649 0.40 -1.1
758,087 - PP_0649 0.40 +1.6
758,189 - PP_0649 0.65 -1.0
758,189 - PP_0649 0.65 -0.1
758,306 - +0.4
758,330 + +0.1
758,331 - +0.3
758,331 - +1.8
758,331 - -1.2
758,331 - -2.7
758,340 + -1.9
758,340 + -0.2
758,341 - +0.1
758,341 - -1.6
758,358 - -2.9
758,384 + PP_0650 0.22 +0.6
758,384 + PP_0650 0.22 +0.9
758,385 - PP_0650 0.23 +0.3
758,385 - PP_0650 0.23 +3.5
758,387 + PP_0650 0.24 +0.4
758,387 + PP_0650 0.24 +0.6
758,388 - PP_0650 0.25 +3.0
758,388 - PP_0650 0.25 -1.3
758,388 - PP_0650 0.25 +0.5
758,388 - PP_0650 0.25 +0.8
758,446 - PP_0650 0.77 +0.6
758,446 - PP_0650 0.77 -0.2
758,451 + PP_0650 0.82 +0.8
758,451 + PP_0650 0.82 +3.1
758,451 + PP_0650 0.82 +1.1
758,452 - PP_0650 0.83 -0.5
758,452 - PP_0650 0.83 +3.6
758,486 + -0.9
758,486 + -1.3
758,486 + -0.4
758,514 + -1.8
758,514 + -0.4
758,515 - +0.3
758,538 + +0.0
758,539 - -0.7
758,539 - +0.3
758,539 - +0.4
758,560 - -0.8
758,562 - -1.2
758,626 - PP_0651 0.10 -1.1
758,626 - PP_0651 0.10 -2.7
758,638 + PP_0651 0.13 -0.5
758,638 + PP_0651 0.13 +0.8
758,639 - PP_0651 0.13 +0.1
758,640 + PP_0651 0.14 +1.9
758,640 + PP_0651 0.14 -0.0
758,737 + PP_0651 0.35 -2.2
758,738 - -0.2
758,757 + PP_0651 0.40 +1.7
758,757 + PP_0651 0.40 -0.6
758,758 - PP_0651 0.40 -0.2
758,758 - PP_0651 0.40 +0.1
758,763 + PP_0651 0.41 +0.8
758,764 - PP_0651 0.41 +0.8
758,881 + PP_0651 0.67 -0.3
758,881 + PP_0651 0.67 -0.1
758,881 + PP_0651 0.67 +1.6
758,883 + PP_0651 0.68 -0.2
758,883 + PP_0651 0.68 +1.8
758,883 + PP_0651 0.68 -0.6
758,884 - PP_0651 0.68 -0.3
758,913 + PP_0651 0.74 -0.9
758,913 + PP_0651 0.74 -1.5
758,913 + PP_0651 0.74 -1.0
758,913 + PP_0651 0.74 -1.0
758,913 + PP_0651 0.74 +0.3
758,914 - PP_0651 0.74 +3.5
758,914 - PP_0651 0.74 -0.4
758,914 - PP_0651 0.74 +0.7
758,914 - PP_0651 0.74 -2.4
758,914 - PP_0651 0.74 +1.0
758,948 + PP_0651 0.82 +0.2
758,948 + PP_0651 0.82 -2.2
759,011 - -1.5
759,026 + +0.5
759,026 + -2.3
759,027 - -0.3
759,042 + -0.5
759,042 + +1.4
759,047 + +0.8
759,048 - -3.1
759,048 - +1.1
759,070 - -0.4
759,070 - -0.9
759,092 + -0.9
759,092 + -0.0
759,092 + -0.2
759,092 + +0.3
759,093 - -2.7
759,093 - -0.2
759,093 - +1.8
759,093 - -0.5
759,096 + +0.8
759,096 + -2.0
759,096 + +0.1
759,097 - +3.0
759,097 - +1.1
759,118 + -2.2
759,118 + +0.1
759,119 - +0.6
759,119 - +0.8
759,202 + -1.1
759,226 + +0.4
759,276 + +0.8
759,277 - +1.5
759,288 + -0.3
759,288 + -0.9
759,288 + +0.8
759,289 - -2.2
759,294 + -1.0
759,294 + +0.8
759,295 - -2.2
759,310 + -2.3
759,310 + +4.6
759,310 + +0.7
759,310 + -0.3
759,311 - -1.8
759,313 + +0.6
759,313 + +0.5
759,374 + -1.0
759,375 - -0.9
759,375 - +0.8
759,396 + -1.7
759,419 + +2.8
759,434 - -1.6

Or see this region's nucleotide sequence