Strain Fitness in Pseudomonas putida KT2440 around PP_0611

Experiment: pH 8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0609 and PP_0610 overlap by 4 nucleotidesPP_0610 and PP_0611 are separated by 1 nucleotidesPP_0611 and PP_0612 are separated by 54 nucleotides PP_0609: PP_0609 - conserved exported protein of unknown function, at 715,782 to 716,426 _0609 PP_0610: PP_0610 - conserved exported protein of unknown function, at 716,423 to 716,887 _0610 PP_0611: PP_0611 - Type IV pili biogenesis protein PilE, at 716,889 to 717,278 _0611 PP_0612: PP_0612 - FAD-dependent glycine/D-amino acid oxidase, at 717,333 to 718,430 _0612 Position (kb) 716 717 718Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 716.029 kb on + strand, within PP_0609at 716.185 kb on + strand, within PP_0609at 716.185 kb on + strandat 716.185 kb on + strand, within PP_0609at 716.186 kb on - strand, within PP_0609at 716.186 kb on - strandat 716.186 kb on - strand, within PP_0609at 716.186 kb on - strand, within PP_0609at 716.186 kb on - strand, within PP_0609at 716.208 kb on + strand, within PP_0609at 716.208 kb on + strand, within PP_0609at 716.208 kb on + strand, within PP_0609at 716.208 kb on + strand, within PP_0609at 716.208 kb on + strand, within PP_0609at 716.208 kb on + strand, within PP_0609at 716.209 kb on - strand, within PP_0609at 716.209 kb on - strand, within PP_0609at 716.214 kb on + strand, within PP_0609at 716.214 kb on + strand, within PP_0609at 716.214 kb on + strand, within PP_0609at 716.214 kb on + strand, within PP_0609at 716.215 kb on - strandat 716.215 kb on - strand, within PP_0609at 716.215 kb on - strand, within PP_0609at 716.231 kb on + strand, within PP_0609at 716.232 kb on - strand, within PP_0609at 716.232 kb on - strand, within PP_0609at 716.232 kb on - strand, within PP_0609at 716.280 kb on - strand, within PP_0609at 716.337 kb on - strand, within PP_0609at 716.352 kb on + strand, within PP_0609at 716.353 kb on - strand, within PP_0609at 716.452 kb on - strandat 716.629 kb on + strand, within PP_0610at 716.683 kb on + strand, within PP_0610at 716.684 kb on - strand, within PP_0610at 716.826 kb on - strand, within PP_0610at 716.826 kb on - strand, within PP_0610at 716.970 kb on + strand, within PP_0611at 716.971 kb on - strand, within PP_0611at 717.070 kb on - strand, within PP_0611at 717.101 kb on + strand, within PP_0611at 717.108 kb on + strand, within PP_0611at 717.109 kb on - strand, within PP_0611at 717.109 kb on - strand, within PP_0611at 717.109 kb on - strand, within PP_0611at 717.111 kb on + strand, within PP_0611at 717.112 kb on - strand, within PP_0611at 717.112 kb on - strand, within PP_0611at 717.112 kb on - strand, within PP_0611at 717.112 kb on - strand, within PP_0611at 717.167 kb on - strand, within PP_0611at 717.311 kb on - strandat 717.346 kb on + strandat 717.347 kb on - strandat 717.347 kb on - strandat 717.487 kb on - strand, within PP_0612at 717.487 kb on - strand, within PP_0612at 717.543 kb on + strand, within PP_0612at 717.612 kb on + strand, within PP_0612at 717.702 kb on + strand, within PP_0612at 717.702 kb on + strand, within PP_0612at 717.747 kb on + strand, within PP_0612at 717.747 kb on + strand, within PP_0612at 717.747 kb on + strand, within PP_0612at 717.747 kb on + strand, within PP_0612at 717.747 kb on + strand, within PP_0612at 717.747 kb on + strand, within PP_0612at 717.748 kb on - strand, within PP_0612at 717.748 kb on - strand, within PP_0612at 717.748 kb on - strand, within PP_0612at 717.748 kb on - strand, within PP_0612at 717.748 kb on - strand, within PP_0612at 717.748 kb on - strand, within PP_0612at 717.748 kb on - strand, within PP_0612at 717.889 kb on + strand, within PP_0612at 717.889 kb on + strand, within PP_0612at 717.889 kb on + strand, within PP_0612at 717.890 kb on - strand, within PP_0612at 717.965 kb on + strand, within PP_0612at 718.263 kb on + strand, within PP_0612at 718.263 kb on + strand, within PP_0612at 718.263 kb on + strand, within PP_0612at 718.263 kb on + strand, within PP_0612at 718.263 kb on + strand, within PP_0612at 718.263 kb on + strand, within PP_0612at 718.264 kb on - strand, within PP_0612

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Per-strain Table

Position Strand Gene LocusTag Fraction pH 8
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716,029 + PP_0609 0.38 +1.5
716,185 + PP_0609 0.62 -2.0
716,185 + -0.2
716,185 + PP_0609 0.62 +0.8
716,186 - PP_0609 0.63 +0.8
716,186 - +1.4
716,186 - PP_0609 0.63 -3.3
716,186 - PP_0609 0.63 -2.8
716,186 - PP_0609 0.63 -1.2
716,208 + PP_0609 0.66 +0.1
716,208 + PP_0609 0.66 +2.4
716,208 + PP_0609 0.66 +1.5
716,208 + PP_0609 0.66 +0.4
716,208 + PP_0609 0.66 -0.3
716,208 + PP_0609 0.66 +2.4
716,209 - PP_0609 0.66 -0.5
716,209 - PP_0609 0.66 -3.7
716,214 + PP_0609 0.67 -2.2
716,214 + PP_0609 0.67 +0.2
716,214 + PP_0609 0.67 +0.1
716,214 + PP_0609 0.67 -1.2
716,215 - +0.8
716,215 - PP_0609 0.67 -2.6
716,215 - PP_0609 0.67 -0.3
716,231 + PP_0609 0.70 -1.6
716,232 - PP_0609 0.70 +0.3
716,232 - PP_0609 0.70 +2.8
716,232 - PP_0609 0.70 -1.8
716,280 - PP_0609 0.77 -0.3
716,337 - PP_0609 0.86 -1.2
716,352 + PP_0609 0.88 -0.5
716,353 - PP_0609 0.89 -1.8
716,452 - -0.1
716,629 + PP_0610 0.44 +0.8
716,683 + PP_0610 0.56 -1.3
716,684 - PP_0610 0.56 -0.9
716,826 - PP_0610 0.87 -2.5
716,826 - PP_0610 0.87 -1.1
716,970 + PP_0611 0.21 -1.2
716,971 - PP_0611 0.21 +0.8
717,070 - PP_0611 0.46 +0.8
717,101 + PP_0611 0.54 +0.5
717,108 + PP_0611 0.56 +2.8
717,109 - PP_0611 0.56 -0.8
717,109 - PP_0611 0.56 -2.2
717,109 - PP_0611 0.56 +1.5
717,111 + PP_0611 0.57 -1.1
717,112 - PP_0611 0.57 -2.1
717,112 - PP_0611 0.57 -2.6
717,112 - PP_0611 0.57 +0.8
717,112 - PP_0611 0.57 +0.6
717,167 - PP_0611 0.71 +1.1
717,311 - +0.5
717,346 + +1.1
717,347 - -2.5
717,347 - +1.2
717,487 - PP_0612 0.14 -0.1
717,487 - PP_0612 0.14 +1.0
717,543 + PP_0612 0.19 -0.9
717,612 + PP_0612 0.25 -0.0
717,702 + PP_0612 0.34 +0.4
717,702 + PP_0612 0.34 +1.1
717,747 + PP_0612 0.38 -3.1
717,747 + PP_0612 0.38 -1.2
717,747 + PP_0612 0.38 -1.8
717,747 + PP_0612 0.38 -0.2
717,747 + PP_0612 0.38 -1.2
717,747 + PP_0612 0.38 -0.2
717,748 - PP_0612 0.38 +1.8
717,748 - PP_0612 0.38 -0.5
717,748 - PP_0612 0.38 -0.8
717,748 - PP_0612 0.38 +1.7
717,748 - PP_0612 0.38 -0.3
717,748 - PP_0612 0.38 +0.8
717,748 - PP_0612 0.38 +1.8
717,889 + PP_0612 0.51 +1.9
717,889 + PP_0612 0.51 +1.8
717,889 + PP_0612 0.51 -0.1
717,890 - PP_0612 0.51 -0.8
717,965 + PP_0612 0.58 +2.4
718,263 + PP_0612 0.85 +0.8
718,263 + PP_0612 0.85 +1.8
718,263 + PP_0612 0.85 -1.1
718,263 + PP_0612 0.85 -0.8
718,263 + PP_0612 0.85 +1.0
718,263 + PP_0612 0.85 +1.8
718,264 - PP_0612 0.85 -1.5

Or see this region's nucleotide sequence