Experiment: pH 8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0496 and PP_0497 are separated by 178 nucleotides PP_0497 and PP_0498 are separated by 11 nucleotides
PP_0496: PP_0496 - Sodium/alanine symporter, at 585,328 to 586,770
_0496
PP_0497: PP_0497 - Transcriptional regulator, Cro/CI family, at 586,949 to 587,758
_0497
PP_0498: PP_0498 - conserved protein of unknown function, at 587,770 to 588,645
_0498
Position (kb)
586
587
588 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4
5 at 586.118 kb on + strand, within PP_0496 at 586.119 kb on - strand, within PP_0496 at 586.289 kb on + strand, within PP_0496 at 586.289 kb on + strand, within PP_0496 at 586.289 kb on + strand, within PP_0496 at 586.290 kb on - strand, within PP_0496 at 586.290 kb on - strand, within PP_0496 at 586.319 kb on + strand, within PP_0496 at 586.319 kb on + strand, within PP_0496 at 586.385 kb on + strand, within PP_0496 at 586.385 kb on + strand, within PP_0496 at 586.385 kb on + strand, within PP_0496 at 586.385 kb on + strand, within PP_0496 at 586.385 kb on + strand, within PP_0496 at 586.385 kb on + strand, within PP_0496 at 586.386 kb on - strand, within PP_0496 at 586.386 kb on - strand, within PP_0496 at 586.386 kb on - strand, within PP_0496 at 586.386 kb on - strand, within PP_0496 at 586.386 kb on - strand, within PP_0496 at 586.386 kb on - strand, within PP_0496 at 586.386 kb on - strand, within PP_0496 at 586.388 kb on + strand, within PP_0496 at 586.388 kb on + strand, within PP_0496 at 586.388 kb on + strand, within PP_0496 at 586.388 kb on + strand, within PP_0496 at 586.389 kb on - strand, within PP_0496 at 586.433 kb on + strand, within PP_0496 at 586.434 kb on - strand, within PP_0496 at 586.434 kb on - strand, within PP_0496 at 586.434 kb on - strand, within PP_0496 at 586.653 kb on + strand at 586.653 kb on + strand at 586.654 kb on - strand at 586.654 kb on - strand at 586.654 kb on - strand at 586.700 kb on + strand at 586.700 kb on + strand at 586.700 kb on + strand at 586.700 kb on + strand at 586.701 kb on - strand at 586.701 kb on - strand at 586.701 kb on - strand at 586.701 kb on - strand at 586.857 kb on + strand at 586.948 kb on + strand at 586.948 kb on + strand at 586.949 kb on - strand at 586.949 kb on - strand at 587.003 kb on - strand at 587.054 kb on + strand, within PP_0497 at 587.054 kb on + strand, within PP_0497 at 587.055 kb on - strand, within PP_0497 at 587.055 kb on - strand at 587.055 kb on - strand, within PP_0497 at 587.055 kb on - strand, within PP_0497 at 587.099 kb on - strand, within PP_0497 at 587.261 kb on + strand, within PP_0497 at 587.274 kb on - strand, within PP_0497 at 587.282 kb on + strand, within PP_0497 at 587.282 kb on + strand, within PP_0497 at 587.416 kb on - strand, within PP_0497 at 587.569 kb on - strand, within PP_0497 at 587.619 kb on - strand, within PP_0497 at 587.691 kb on + strand at 587.692 kb on - strand at 587.692 kb on - strand at 587.756 kb on + strand at 587.756 kb on + strand at 587.756 kb on + strand at 587.762 kb on + strand at 587.763 kb on - strand at 587.771 kb on + strand at 587.771 kb on + strand at 587.832 kb on + strand at 587.925 kb on + strand, within PP_0498 at 587.948 kb on + strand, within PP_0498 at 587.949 kb on - strand, within PP_0498 at 587.949 kb on - strand, within PP_0498 at 587.949 kb on - strand, within PP_0498 at 588.030 kb on - strand, within PP_0498 at 588.047 kb on - strand, within PP_0498 at 588.047 kb on - strand, within PP_0498 at 588.049 kb on + strand, within PP_0498 at 588.049 kb on + strand, within PP_0498 at 588.049 kb on + strand, within PP_0498 at 588.050 kb on - strand, within PP_0498 at 588.050 kb on - strand, within PP_0498 at 588.050 kb on - strand, within PP_0498 at 588.078 kb on + strand, within PP_0498 at 588.078 kb on + strand, within PP_0498 at 588.078 kb on + strand, within PP_0498 at 588.078 kb on + strand, within PP_0498 at 588.078 kb on + strand, within PP_0498 at 588.078 kb on + strand, within PP_0498 at 588.079 kb on - strand, within PP_0498 at 588.079 kb on - strand, within PP_0498 at 588.079 kb on - strand, within PP_0498 at 588.080 kb on + strand, within PP_0498 at 588.080 kb on + strand, within PP_0498 at 588.080 kb on + strand, within PP_0498 at 588.080 kb on + strand, within PP_0498 at 588.080 kb on + strand, within PP_0498 at 588.080 kb on + strand, within PP_0498 at 588.080 kb on + strand, within PP_0498 at 588.081 kb on - strand, within PP_0498 at 588.081 kb on - strand, within PP_0498 at 588.081 kb on - strand, within PP_0498 at 588.081 kb on - strand, within PP_0498 at 588.081 kb on - strand, within PP_0498 at 588.084 kb on + strand, within PP_0498 at 588.084 kb on + strand, within PP_0498 at 588.084 kb on + strand, within PP_0498 at 588.085 kb on - strand, within PP_0498 at 588.085 kb on - strand, within PP_0498 at 588.085 kb on - strand, within PP_0498 at 588.085 kb on - strand, within PP_0498 at 588.085 kb on - strand, within PP_0498 at 588.085 kb on - strand, within PP_0498 at 588.187 kb on + strand, within PP_0498 at 588.187 kb on + strand, within PP_0498 at 588.188 kb on - strand, within PP_0498 at 588.225 kb on + strand, within PP_0498 at 588.225 kb on + strand, within PP_0498 at 588.226 kb on - strand, within PP_0498 at 588.226 kb on - strand, within PP_0498 at 588.226 kb on - strand, within PP_0498 at 588.231 kb on + strand, within PP_0498 at 588.231 kb on + strand, within PP_0498 at 588.232 kb on - strand, within PP_0498 at 588.232 kb on - strand, within PP_0498 at 588.232 kb on - strand, within PP_0498 at 588.232 kb on - strand, within PP_0498 at 588.232 kb on - strand, within PP_0498 at 588.250 kb on - strand, within PP_0498 at 588.257 kb on - strand, within PP_0498 at 588.413 kb on + strand, within PP_0498 at 588.487 kb on - strand, within PP_0498 at 588.493 kb on + strand, within PP_0498 at 588.518 kb on + strand, within PP_0498 at 588.518 kb on + strand, within PP_0498 at 588.518 kb on + strand, within PP_0498 at 588.519 kb on - strand, within PP_0498 at 588.625 kb on + strand at 588.625 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction pH 8 remove 586,118 + PP_0496 0.55 +2.8 586,119 - PP_0496 0.55 +3.0 586,289 + PP_0496 0.67 +0.8 586,289 + PP_0496 0.67 -0.4 586,289 + PP_0496 0.67 -1.5 586,290 - PP_0496 0.67 +0.8 586,290 - PP_0496 0.67 -0.5 586,319 + PP_0496 0.69 -0.6 586,319 + PP_0496 0.69 +2.4 586,385 + PP_0496 0.73 -0.0 586,385 + PP_0496 0.73 -0.8 586,385 + PP_0496 0.73 +1.8 586,385 + PP_0496 0.73 +1.4 586,385 + PP_0496 0.73 +1.8 586,385 + PP_0496 0.73 +0.8 586,386 - PP_0496 0.73 -1.2 586,386 - PP_0496 0.73 -0.4 586,386 - PP_0496 0.73 +0.1 586,386 - PP_0496 0.73 +0.1 586,386 - PP_0496 0.73 -0.6 586,386 - PP_0496 0.73 +0.8 586,386 - PP_0496 0.73 +0.3 586,388 + PP_0496 0.73 +1.6 586,388 + PP_0496 0.73 -2.2 586,388 + PP_0496 0.73 -0.4 586,388 + PP_0496 0.73 -1.1 586,389 - PP_0496 0.74 -3.4 586,433 + PP_0496 0.77 -0.3 586,434 - PP_0496 0.77 +0.3 586,434 - PP_0496 0.77 +2.4 586,434 - PP_0496 0.77 +0.8 586,653 + +0.8 586,653 + -1.5 586,654 - -1.8 586,654 - -0.2 586,654 - +0.3 586,700 + +0.8 586,700 + +1.9 586,700 + +0.8 586,700 + +0.8 586,701 - -0.3 586,701 - +1.6 586,701 - +1.8 586,701 - +0.0 586,857 + +0.8 586,948 + -2.7 586,948 + -0.7 586,949 - -1.3 586,949 - -1.6 587,003 - +0.7 587,054 + PP_0497 0.13 +0.3 587,054 + PP_0497 0.13 +0.7 587,055 - PP_0497 0.13 +1.8 587,055 - -1.0 587,055 - PP_0497 0.13 +0.8 587,055 - PP_0497 0.13 -1.4 587,099 - PP_0497 0.19 -0.3 587,261 + PP_0497 0.39 +5.3 587,274 - PP_0497 0.40 -1.8 587,282 + PP_0497 0.41 -1.4 587,282 + PP_0497 0.41 -1.4 587,416 - PP_0497 0.58 -1.8 587,569 - PP_0497 0.77 -1.4 587,619 - PP_0497 0.83 -1.8 587,691 + -1.5 587,692 - +3.1 587,692 - -2.2 587,756 + +1.8 587,756 + +0.8 587,756 + +2.4 587,762 + -1.5 587,763 - +0.8 587,771 + +1.2 587,771 + -1.4 587,832 + +0.7 587,925 + PP_0498 0.18 -1.2 587,948 + PP_0498 0.20 -1.8 587,949 - PP_0498 0.20 -0.8 587,949 - PP_0498 0.20 +0.8 587,949 - PP_0498 0.20 +0.8 588,030 - PP_0498 0.30 -0.8 588,047 - PP_0498 0.32 +1.0 588,047 - PP_0498 0.32 -1.2 588,049 + PP_0498 0.32 -2.5 588,049 + PP_0498 0.32 -2.0 588,049 + PP_0498 0.32 -0.2 588,050 - PP_0498 0.32 -0.2 588,050 - PP_0498 0.32 +0.3 588,050 - PP_0498 0.32 +0.8 588,078 + PP_0498 0.35 -0.9 588,078 + PP_0498 0.35 -1.7 588,078 + PP_0498 0.35 -2.7 588,078 + PP_0498 0.35 -0.6 588,078 + PP_0498 0.35 +0.7 588,078 + PP_0498 0.35 +1.8 588,079 - PP_0498 0.35 -0.7 588,079 - PP_0498 0.35 -2.5 588,079 - PP_0498 0.35 -1.5 588,080 + PP_0498 0.35 -3.8 588,080 + PP_0498 0.35 +0.8 588,080 + PP_0498 0.35 +1.5 588,080 + PP_0498 0.35 +0.4 588,080 + PP_0498 0.35 -0.3 588,080 + PP_0498 0.35 +0.8 588,080 + PP_0498 0.35 -1.0 588,081 - PP_0498 0.36 -2.9 588,081 - PP_0498 0.36 -1.3 588,081 - PP_0498 0.36 +4.1 588,081 - PP_0498 0.36 -0.8 588,081 - PP_0498 0.36 +1.1 588,084 + PP_0498 0.36 +2.4 588,084 + PP_0498 0.36 +1.8 588,084 + PP_0498 0.36 +0.8 588,085 - PP_0498 0.36 -3.0 588,085 - PP_0498 0.36 -1.7 588,085 - PP_0498 0.36 -2.0 588,085 - PP_0498 0.36 -0.9 588,085 - PP_0498 0.36 +0.2 588,085 - PP_0498 0.36 +0.6 588,187 + PP_0498 0.48 -1.8 588,187 + PP_0498 0.48 +1.0 588,188 - PP_0498 0.48 +0.8 588,225 + PP_0498 0.52 +1.8 588,225 + PP_0498 0.52 +0.2 588,226 - PP_0498 0.52 -1.2 588,226 - PP_0498 0.52 +0.8 588,226 - PP_0498 0.52 -0.8 588,231 + PP_0498 0.53 -0.0 588,231 + PP_0498 0.53 -0.1 588,232 - PP_0498 0.53 +1.4 588,232 - PP_0498 0.53 -3.7 588,232 - PP_0498 0.53 -0.8 588,232 - PP_0498 0.53 +0.0 588,232 - PP_0498 0.53 -2.3 588,250 - PP_0498 0.55 +2.8 588,257 - PP_0498 0.56 -2.3 588,413 + PP_0498 0.73 -0.5 588,487 - PP_0498 0.82 -1.0 588,493 + PP_0498 0.83 -1.1 588,518 + PP_0498 0.85 +3.8 588,518 + PP_0498 0.85 -0.1 588,518 + PP_0498 0.85 -1.8 588,519 - PP_0498 0.86 -1.0 588,625 + +0.8 588,625 + +1.9
Or see this region's nucleotide sequence