Strain Fitness in Pseudomonas putida KT2440 around PP_0497

Experiment: pH 8

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_0496 and PP_0497 are separated by 178 nucleotidesPP_0497 and PP_0498 are separated by 11 nucleotides PP_0496: PP_0496 - Sodium/alanine symporter, at 585,328 to 586,770 _0496 PP_0497: PP_0497 - Transcriptional regulator, Cro/CI family, at 586,949 to 587,758 _0497 PP_0498: PP_0498 - conserved protein of unknown function, at 587,770 to 588,645 _0498 Position (kb) 586 587 588Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 586.118 kb on + strand, within PP_0496at 586.119 kb on - strand, within PP_0496at 586.289 kb on + strand, within PP_0496at 586.289 kb on + strand, within PP_0496at 586.289 kb on + strand, within PP_0496at 586.290 kb on - strand, within PP_0496at 586.290 kb on - strand, within PP_0496at 586.319 kb on + strand, within PP_0496at 586.319 kb on + strand, within PP_0496at 586.385 kb on + strand, within PP_0496at 586.385 kb on + strand, within PP_0496at 586.385 kb on + strand, within PP_0496at 586.385 kb on + strand, within PP_0496at 586.385 kb on + strand, within PP_0496at 586.385 kb on + strand, within PP_0496at 586.386 kb on - strand, within PP_0496at 586.386 kb on - strand, within PP_0496at 586.386 kb on - strand, within PP_0496at 586.386 kb on - strand, within PP_0496at 586.386 kb on - strand, within PP_0496at 586.386 kb on - strand, within PP_0496at 586.386 kb on - strand, within PP_0496at 586.388 kb on + strand, within PP_0496at 586.388 kb on + strand, within PP_0496at 586.388 kb on + strand, within PP_0496at 586.388 kb on + strand, within PP_0496at 586.389 kb on - strand, within PP_0496at 586.433 kb on + strand, within PP_0496at 586.434 kb on - strand, within PP_0496at 586.434 kb on - strand, within PP_0496at 586.434 kb on - strand, within PP_0496at 586.653 kb on + strandat 586.653 kb on + strandat 586.654 kb on - strandat 586.654 kb on - strandat 586.654 kb on - strandat 586.700 kb on + strandat 586.700 kb on + strandat 586.700 kb on + strandat 586.700 kb on + strandat 586.701 kb on - strandat 586.701 kb on - strandat 586.701 kb on - strandat 586.701 kb on - strandat 586.857 kb on + strandat 586.948 kb on + strandat 586.948 kb on + strandat 586.949 kb on - strandat 586.949 kb on - strandat 587.003 kb on - strandat 587.054 kb on + strand, within PP_0497at 587.054 kb on + strand, within PP_0497at 587.055 kb on - strand, within PP_0497at 587.055 kb on - strandat 587.055 kb on - strand, within PP_0497at 587.055 kb on - strand, within PP_0497at 587.099 kb on - strand, within PP_0497at 587.261 kb on + strand, within PP_0497at 587.274 kb on - strand, within PP_0497at 587.282 kb on + strand, within PP_0497at 587.282 kb on + strand, within PP_0497at 587.416 kb on - strand, within PP_0497at 587.569 kb on - strand, within PP_0497at 587.619 kb on - strand, within PP_0497at 587.691 kb on + strandat 587.692 kb on - strandat 587.692 kb on - strandat 587.756 kb on + strandat 587.756 kb on + strandat 587.756 kb on + strandat 587.762 kb on + strandat 587.763 kb on - strandat 587.771 kb on + strandat 587.771 kb on + strandat 587.832 kb on + strandat 587.925 kb on + strand, within PP_0498at 587.948 kb on + strand, within PP_0498at 587.949 kb on - strand, within PP_0498at 587.949 kb on - strand, within PP_0498at 587.949 kb on - strand, within PP_0498at 588.030 kb on - strand, within PP_0498at 588.047 kb on - strand, within PP_0498at 588.047 kb on - strand, within PP_0498at 588.049 kb on + strand, within PP_0498at 588.049 kb on + strand, within PP_0498at 588.049 kb on + strand, within PP_0498at 588.050 kb on - strand, within PP_0498at 588.050 kb on - strand, within PP_0498at 588.050 kb on - strand, within PP_0498at 588.078 kb on + strand, within PP_0498at 588.078 kb on + strand, within PP_0498at 588.078 kb on + strand, within PP_0498at 588.078 kb on + strand, within PP_0498at 588.078 kb on + strand, within PP_0498at 588.078 kb on + strand, within PP_0498at 588.079 kb on - strand, within PP_0498at 588.079 kb on - strand, within PP_0498at 588.079 kb on - strand, within PP_0498at 588.080 kb on + strand, within PP_0498at 588.080 kb on + strand, within PP_0498at 588.080 kb on + strand, within PP_0498at 588.080 kb on + strand, within PP_0498at 588.080 kb on + strand, within PP_0498at 588.080 kb on + strand, within PP_0498at 588.080 kb on + strand, within PP_0498at 588.081 kb on - strand, within PP_0498at 588.081 kb on - strand, within PP_0498at 588.081 kb on - strand, within PP_0498at 588.081 kb on - strand, within PP_0498at 588.081 kb on - strand, within PP_0498at 588.084 kb on + strand, within PP_0498at 588.084 kb on + strand, within PP_0498at 588.084 kb on + strand, within PP_0498at 588.085 kb on - strand, within PP_0498at 588.085 kb on - strand, within PP_0498at 588.085 kb on - strand, within PP_0498at 588.085 kb on - strand, within PP_0498at 588.085 kb on - strand, within PP_0498at 588.085 kb on - strand, within PP_0498at 588.187 kb on + strand, within PP_0498at 588.187 kb on + strand, within PP_0498at 588.188 kb on - strand, within PP_0498at 588.225 kb on + strand, within PP_0498at 588.225 kb on + strand, within PP_0498at 588.226 kb on - strand, within PP_0498at 588.226 kb on - strand, within PP_0498at 588.226 kb on - strand, within PP_0498at 588.231 kb on + strand, within PP_0498at 588.231 kb on + strand, within PP_0498at 588.232 kb on - strand, within PP_0498at 588.232 kb on - strand, within PP_0498at 588.232 kb on - strand, within PP_0498at 588.232 kb on - strand, within PP_0498at 588.232 kb on - strand, within PP_0498at 588.250 kb on - strand, within PP_0498at 588.257 kb on - strand, within PP_0498at 588.413 kb on + strand, within PP_0498at 588.487 kb on - strand, within PP_0498at 588.493 kb on + strand, within PP_0498at 588.518 kb on + strand, within PP_0498at 588.518 kb on + strand, within PP_0498at 588.518 kb on + strand, within PP_0498at 588.519 kb on - strand, within PP_0498at 588.625 kb on + strandat 588.625 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction pH 8
remove
586,118 + PP_0496 0.55 +2.8
586,119 - PP_0496 0.55 +3.0
586,289 + PP_0496 0.67 +0.8
586,289 + PP_0496 0.67 -0.4
586,289 + PP_0496 0.67 -1.5
586,290 - PP_0496 0.67 +0.8
586,290 - PP_0496 0.67 -0.5
586,319 + PP_0496 0.69 -0.6
586,319 + PP_0496 0.69 +2.4
586,385 + PP_0496 0.73 -0.0
586,385 + PP_0496 0.73 -0.8
586,385 + PP_0496 0.73 +1.8
586,385 + PP_0496 0.73 +1.4
586,385 + PP_0496 0.73 +1.8
586,385 + PP_0496 0.73 +0.8
586,386 - PP_0496 0.73 -1.2
586,386 - PP_0496 0.73 -0.4
586,386 - PP_0496 0.73 +0.1
586,386 - PP_0496 0.73 +0.1
586,386 - PP_0496 0.73 -0.6
586,386 - PP_0496 0.73 +0.8
586,386 - PP_0496 0.73 +0.3
586,388 + PP_0496 0.73 +1.6
586,388 + PP_0496 0.73 -2.2
586,388 + PP_0496 0.73 -0.4
586,388 + PP_0496 0.73 -1.1
586,389 - PP_0496 0.74 -3.4
586,433 + PP_0496 0.77 -0.3
586,434 - PP_0496 0.77 +0.3
586,434 - PP_0496 0.77 +2.4
586,434 - PP_0496 0.77 +0.8
586,653 + +0.8
586,653 + -1.5
586,654 - -1.8
586,654 - -0.2
586,654 - +0.3
586,700 + +0.8
586,700 + +1.9
586,700 + +0.8
586,700 + +0.8
586,701 - -0.3
586,701 - +1.6
586,701 - +1.8
586,701 - +0.0
586,857 + +0.8
586,948 + -2.7
586,948 + -0.7
586,949 - -1.3
586,949 - -1.6
587,003 - +0.7
587,054 + PP_0497 0.13 +0.3
587,054 + PP_0497 0.13 +0.7
587,055 - PP_0497 0.13 +1.8
587,055 - -1.0
587,055 - PP_0497 0.13 +0.8
587,055 - PP_0497 0.13 -1.4
587,099 - PP_0497 0.19 -0.3
587,261 + PP_0497 0.39 +5.3
587,274 - PP_0497 0.40 -1.8
587,282 + PP_0497 0.41 -1.4
587,282 + PP_0497 0.41 -1.4
587,416 - PP_0497 0.58 -1.8
587,569 - PP_0497 0.77 -1.4
587,619 - PP_0497 0.83 -1.8
587,691 + -1.5
587,692 - +3.1
587,692 - -2.2
587,756 + +1.8
587,756 + +0.8
587,756 + +2.4
587,762 + -1.5
587,763 - +0.8
587,771 + +1.2
587,771 + -1.4
587,832 + +0.7
587,925 + PP_0498 0.18 -1.2
587,948 + PP_0498 0.20 -1.8
587,949 - PP_0498 0.20 -0.8
587,949 - PP_0498 0.20 +0.8
587,949 - PP_0498 0.20 +0.8
588,030 - PP_0498 0.30 -0.8
588,047 - PP_0498 0.32 +1.0
588,047 - PP_0498 0.32 -1.2
588,049 + PP_0498 0.32 -2.5
588,049 + PP_0498 0.32 -2.0
588,049 + PP_0498 0.32 -0.2
588,050 - PP_0498 0.32 -0.2
588,050 - PP_0498 0.32 +0.3
588,050 - PP_0498 0.32 +0.8
588,078 + PP_0498 0.35 -0.9
588,078 + PP_0498 0.35 -1.7
588,078 + PP_0498 0.35 -2.7
588,078 + PP_0498 0.35 -0.6
588,078 + PP_0498 0.35 +0.7
588,078 + PP_0498 0.35 +1.8
588,079 - PP_0498 0.35 -0.7
588,079 - PP_0498 0.35 -2.5
588,079 - PP_0498 0.35 -1.5
588,080 + PP_0498 0.35 -3.8
588,080 + PP_0498 0.35 +0.8
588,080 + PP_0498 0.35 +1.5
588,080 + PP_0498 0.35 +0.4
588,080 + PP_0498 0.35 -0.3
588,080 + PP_0498 0.35 +0.8
588,080 + PP_0498 0.35 -1.0
588,081 - PP_0498 0.36 -2.9
588,081 - PP_0498 0.36 -1.3
588,081 - PP_0498 0.36 +4.1
588,081 - PP_0498 0.36 -0.8
588,081 - PP_0498 0.36 +1.1
588,084 + PP_0498 0.36 +2.4
588,084 + PP_0498 0.36 +1.8
588,084 + PP_0498 0.36 +0.8
588,085 - PP_0498 0.36 -3.0
588,085 - PP_0498 0.36 -1.7
588,085 - PP_0498 0.36 -2.0
588,085 - PP_0498 0.36 -0.9
588,085 - PP_0498 0.36 +0.2
588,085 - PP_0498 0.36 +0.6
588,187 + PP_0498 0.48 -1.8
588,187 + PP_0498 0.48 +1.0
588,188 - PP_0498 0.48 +0.8
588,225 + PP_0498 0.52 +1.8
588,225 + PP_0498 0.52 +0.2
588,226 - PP_0498 0.52 -1.2
588,226 - PP_0498 0.52 +0.8
588,226 - PP_0498 0.52 -0.8
588,231 + PP_0498 0.53 -0.0
588,231 + PP_0498 0.53 -0.1
588,232 - PP_0498 0.53 +1.4
588,232 - PP_0498 0.53 -3.7
588,232 - PP_0498 0.53 -0.8
588,232 - PP_0498 0.53 +0.0
588,232 - PP_0498 0.53 -2.3
588,250 - PP_0498 0.55 +2.8
588,257 - PP_0498 0.56 -2.3
588,413 + PP_0498 0.73 -0.5
588,487 - PP_0498 0.82 -1.0
588,493 + PP_0498 0.83 -1.1
588,518 + PP_0498 0.85 +3.8
588,518 + PP_0498 0.85 -0.1
588,518 + PP_0498 0.85 -1.8
588,519 - PP_0498 0.86 -1.0
588,625 + +0.8
588,625 + +1.9

Or see this region's nucleotide sequence