Strain Fitness in Pseudomonas putida KT2440 around PP_0348

Experiment: pH 8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0347 and PP_0348 are separated by 17 nucleotidesPP_0348 and PP_5443 are separated by 67 nucleotidesPP_5443 and PP_0349 overlap by 4 nucleotides PP_0347: PP_0347 - conserved protein of unknown function, at 419,701 to 421,143 _0347 PP_0348: PP_0348 - conserved protein of unknown function, at 421,161 to 423,947 _0348 PP_5443: PP_5443 - conserved protein of unknown function, at 424,015 to 424,200 _5443 PP_0349: PP_0349 - putative Membrane protein, at 424,197 to 425,309 _0349 Position (kb) 421 422 423 424Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 421.231 kb on - strandat 421.312 kb on + strandat 421.312 kb on + strandat 421.313 kb on - strandat 421.323 kb on + strandat 421.323 kb on + strandat 421.324 kb on - strandat 421.369 kb on + strandat 421.369 kb on + strandat 421.370 kb on - strandat 421.437 kb on + strandat 421.437 kb on + strandat 421.438 kb on - strandat 421.438 kb on - strandat 421.441 kb on + strand, within PP_0348at 421.442 kb on - strand, within PP_0348at 421.442 kb on - strand, within PP_0348at 421.456 kb on - strand, within PP_0348at 421.484 kb on - strand, within PP_0348at 421.549 kb on + strand, within PP_0348at 421.550 kb on - strand, within PP_0348at 421.609 kb on + strand, within PP_0348at 421.610 kb on - strand, within PP_0348at 421.610 kb on - strand, within PP_0348at 421.675 kb on + strand, within PP_0348at 421.675 kb on + strand, within PP_0348at 421.676 kb on - strand, within PP_0348at 421.676 kb on - strandat 421.677 kb on + strand, within PP_0348at 421.677 kb on + strand, within PP_0348at 421.677 kb on + strand, within PP_0348at 421.677 kb on + strand, within PP_0348at 421.677 kb on + strand, within PP_0348at 421.677 kb on + strand, within PP_0348at 421.678 kb on - strand, within PP_0348at 421.678 kb on - strand, within PP_0348at 421.678 kb on - strand, within PP_0348at 421.690 kb on + strand, within PP_0348at 421.691 kb on - strand, within PP_0348at 421.691 kb on - strand, within PP_0348at 421.694 kb on + strand, within PP_0348at 421.695 kb on - strand, within PP_0348at 421.701 kb on + strand, within PP_0348at 421.702 kb on - strand, within PP_0348at 421.797 kb on + strand, within PP_0348at 421.797 kb on + strand, within PP_0348at 421.823 kb on + strand, within PP_0348at 421.823 kb on + strand, within PP_0348at 421.844 kb on + strand, within PP_0348at 421.855 kb on + strand, within PP_0348at 421.856 kb on - strand, within PP_0348at 421.916 kb on + strand, within PP_0348at 422.089 kb on + strand, within PP_0348at 422.089 kb on + strand, within PP_0348at 422.089 kb on + strand, within PP_0348at 422.089 kb on + strand, within PP_0348at 422.089 kb on + strand, within PP_0348at 422.090 kb on - strand, within PP_0348at 422.090 kb on - strand, within PP_0348at 422.090 kb on - strand, within PP_0348at 422.090 kb on - strand, within PP_0348at 422.090 kb on - strand, within PP_0348at 422.093 kb on - strand, within PP_0348at 422.093 kb on - strand, within PP_0348at 422.205 kb on + strand, within PP_0348at 422.206 kb on - strand, within PP_0348at 422.206 kb on - strand, within PP_0348at 422.209 kb on + strand, within PP_0348at 422.209 kb on + strand, within PP_0348at 422.209 kb on + strand, within PP_0348at 422.209 kb on + strand, within PP_0348at 422.209 kb on + strand, within PP_0348at 422.210 kb on - strand, within PP_0348at 422.210 kb on - strand, within PP_0348at 422.210 kb on - strand, within PP_0348at 422.210 kb on - strand, within PP_0348at 422.210 kb on - strand, within PP_0348at 422.210 kb on - strand, within PP_0348at 422.210 kb on - strand, within PP_0348at 422.305 kb on + strand, within PP_0348at 422.305 kb on + strand, within PP_0348at 422.305 kb on + strand, within PP_0348at 422.306 kb on - strand, within PP_0348at 422.306 kb on - strand, within PP_0348at 422.306 kb on - strand, within PP_0348at 422.306 kb on - strand, within PP_0348at 422.306 kb on - strand, within PP_0348at 422.307 kb on + strand, within PP_0348at 422.307 kb on + strand, within PP_0348at 422.308 kb on - strand, within PP_0348at 422.308 kb on - strand, within PP_0348at 422.308 kb on - strand, within PP_0348at 422.329 kb on + strand, within PP_0348at 422.329 kb on + strand, within PP_0348at 422.330 kb on - strand, within PP_0348at 422.330 kb on - strand, within PP_0348at 422.330 kb on - strand, within PP_0348at 422.330 kb on - strand, within PP_0348at 422.412 kb on + strand, within PP_0348at 422.412 kb on + strand, within PP_0348at 422.467 kb on + strand, within PP_0348at 422.467 kb on + strand, within PP_0348at 422.468 kb on - strand, within PP_0348at 422.468 kb on - strand, within PP_0348at 422.468 kb on - strand, within PP_0348at 422.468 kb on - strand, within PP_0348at 422.611 kb on + strand, within PP_0348at 422.620 kb on + strand, within PP_0348at 422.621 kb on - strand, within PP_0348at 422.662 kb on + strand, within PP_0348at 422.663 kb on - strand, within PP_0348at 422.833 kb on + strand, within PP_0348at 422.833 kb on + strand, within PP_0348at 422.834 kb on - strand, within PP_0348at 422.834 kb on - strand, within PP_0348at 422.834 kb on - strand, within PP_0348at 422.834 kb on - strand, within PP_0348at 422.842 kb on + strand, within PP_0348at 422.842 kb on + strand, within PP_0348at 422.842 kb on + strand, within PP_0348at 422.842 kb on + strand, within PP_0348at 422.842 kb on + strand, within PP_0348at 422.843 kb on - strand, within PP_0348at 422.843 kb on - strand, within PP_0348at 422.843 kb on - strand, within PP_0348at 422.843 kb on - strand, within PP_0348at 422.843 kb on - strand, within PP_0348at 422.892 kb on + strand, within PP_0348at 422.987 kb on + strand, within PP_0348at 422.988 kb on - strand, within PP_0348at 423.078 kb on - strand, within PP_0348at 423.078 kb on - strand, within PP_0348at 423.078 kb on - strand, within PP_0348at 423.101 kb on + strand, within PP_0348at 423.101 kb on + strand, within PP_0348at 423.101 kb on + strand, within PP_0348at 423.101 kb on + strand, within PP_0348at 423.102 kb on - strand, within PP_0348at 423.102 kb on - strand, within PP_0348at 423.102 kb on - strand, within PP_0348at 423.200 kb on + strand, within PP_0348at 423.200 kb on + strand, within PP_0348at 423.200 kb on + strand, within PP_0348at 423.200 kb on + strand, within PP_0348at 423.200 kb on + strand, within PP_0348at 423.201 kb on - strand, within PP_0348at 423.201 kb on - strand, within PP_0348at 423.201 kb on - strand, within PP_0348at 423.204 kb on + strand, within PP_0348at 423.205 kb on - strand, within PP_0348at 423.205 kb on - strand, within PP_0348at 423.276 kb on + strand, within PP_0348at 423.277 kb on - strand, within PP_0348at 423.277 kb on - strand, within PP_0348at 423.277 kb on - strand, within PP_0348at 423.325 kb on + strand, within PP_0348at 423.326 kb on - strand, within PP_0348at 423.326 kb on - strand, within PP_0348at 423.373 kb on + strand, within PP_0348at 423.373 kb on + strand, within PP_0348at 423.568 kb on + strand, within PP_0348at 423.569 kb on - strand, within PP_0348at 423.638 kb on + strand, within PP_0348at 423.638 kb on + strand, within PP_0348at 423.638 kb on + strand, within PP_0348at 423.638 kb on + strand, within PP_0348at 423.639 kb on - strand, within PP_0348at 423.639 kb on - strand, within PP_0348at 423.639 kb on - strand, within PP_0348at 423.639 kb on - strand, within PP_0348at 423.639 kb on - strand, within PP_0348at 423.681 kb on + strandat 423.681 kb on + strandat 423.681 kb on + strandat 423.681 kb on + strandat 423.682 kb on - strandat 423.988 kb on + strandat 423.989 kb on - strandat 424.244 kb on - strandat 424.244 kb on - strandat 424.319 kb on - strand, within PP_0349at 424.363 kb on + strand, within PP_0349at 424.416 kb on + strand, within PP_0349at 424.417 kb on - strand, within PP_0349at 424.472 kb on - strand, within PP_0349at 424.472 kb on - strand, within PP_0349at 424.472 kb on - strand, within PP_0349at 424.674 kb on + strand, within PP_0349at 424.774 kb on - strand, within PP_0349at 424.810 kb on + strand, within PP_0349at 424.810 kb on + strand, within PP_0349at 424.811 kb on - strand, within PP_0349at 424.848 kb on + strand, within PP_0349at 424.848 kb on + strand, within PP_0349at 424.849 kb on - strand, within PP_0349at 424.849 kb on - strand, within PP_0349

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Per-strain Table

Position Strand Gene LocusTag Fraction pH 8
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421,231 - -0.4
421,312 + -0.4
421,312 + +0.3
421,313 - +2.4
421,323 + -2.8
421,323 + +0.2
421,324 - -2.3
421,369 + -1.1
421,369 + +1.0
421,370 - -0.3
421,437 + +0.9
421,437 + +1.9
421,438 - -0.1
421,438 - -0.3
421,441 + PP_0348 0.10 -0.1
421,442 - PP_0348 0.10 +4.3
421,442 - PP_0348 0.10 -0.5
421,456 - PP_0348 0.11 -0.7
421,484 - PP_0348 0.12 +0.9
421,549 + PP_0348 0.14 +1.9
421,550 - PP_0348 0.14 -1.5
421,609 + PP_0348 0.16 +0.2
421,610 - PP_0348 0.16 +2.1
421,610 - PP_0348 0.16 -0.5
421,675 + PP_0348 0.18 -2.8
421,675 + PP_0348 0.18 -1.1
421,676 - PP_0348 0.18 -1.7
421,676 - +1.4
421,677 + PP_0348 0.19 +4.0
421,677 + PP_0348 0.19 +1.5
421,677 + PP_0348 0.19 +1.5
421,677 + PP_0348 0.19 -0.7
421,677 + PP_0348 0.19 +2.3
421,677 + PP_0348 0.19 +0.5
421,678 - PP_0348 0.19 -3.2
421,678 - PP_0348 0.19 -0.3
421,678 - PP_0348 0.19 +0.9
421,690 + PP_0348 0.19 +1.1
421,691 - PP_0348 0.19 -1.5
421,691 - PP_0348 0.19 -0.5
421,694 + PP_0348 0.19 +2.9
421,695 - PP_0348 0.19 -0.3
421,701 + PP_0348 0.19 -0.9
421,702 - PP_0348 0.19 +1.2
421,797 + PP_0348 0.23 +3.2
421,797 + PP_0348 0.23 -1.3
421,823 + PP_0348 0.24 +0.6
421,823 + PP_0348 0.24 +1.3
421,844 + PP_0348 0.25 -2.7
421,855 + PP_0348 0.25 +0.5
421,856 - PP_0348 0.25 -3.5
421,916 + PP_0348 0.27 -0.6
422,089 + PP_0348 0.33 +0.3
422,089 + PP_0348 0.33 +0.9
422,089 + PP_0348 0.33 +2.3
422,089 + PP_0348 0.33 -0.7
422,089 + PP_0348 0.33 +0.9
422,090 - PP_0348 0.33 -1.5
422,090 - PP_0348 0.33 -0.1
422,090 - PP_0348 0.33 -1.5
422,090 - PP_0348 0.33 +0.9
422,090 - PP_0348 0.33 +0.9
422,093 - PP_0348 0.33 -0.1
422,093 - PP_0348 0.33 -2.3
422,205 + PP_0348 0.37 +1.0
422,206 - PP_0348 0.37 +1.1
422,206 - PP_0348 0.37 +1.9
422,209 + PP_0348 0.38 +0.9
422,209 + PP_0348 0.38 +0.9
422,209 + PP_0348 0.38 -0.5
422,209 + PP_0348 0.38 -0.9
422,209 + PP_0348 0.38 +1.2
422,210 - PP_0348 0.38 +0.6
422,210 - PP_0348 0.38 +0.9
422,210 - PP_0348 0.38 +0.7
422,210 - PP_0348 0.38 -2.3
422,210 - PP_0348 0.38 +0.2
422,210 - PP_0348 0.38 +0.9
422,210 - PP_0348 0.38 -1.7
422,305 + PP_0348 0.41 -1.3
422,305 + PP_0348 0.41 +0.9
422,305 + PP_0348 0.41 +0.9
422,306 - PP_0348 0.41 +0.1
422,306 - PP_0348 0.41 +0.9
422,306 - PP_0348 0.41 +0.9
422,306 - PP_0348 0.41 +1.5
422,306 - PP_0348 0.41 +1.9
422,307 + PP_0348 0.41 -2.5
422,307 + PP_0348 0.41 +0.9
422,308 - PP_0348 0.41 -2.2
422,308 - PP_0348 0.41 +0.9
422,308 - PP_0348 0.41 -1.7
422,329 + PP_0348 0.42 +1.2
422,329 + PP_0348 0.42 -1.5
422,330 - PP_0348 0.42 +0.4
422,330 - PP_0348 0.42 +0.9
422,330 - PP_0348 0.42 +1.0
422,330 - PP_0348 0.42 +0.1
422,412 + PP_0348 0.45 +3.4
422,412 + PP_0348 0.45 +0.3
422,467 + PP_0348 0.47 -0.2
422,467 + PP_0348 0.47 +2.2
422,468 - PP_0348 0.47 +0.8
422,468 - PP_0348 0.47 +0.3
422,468 - PP_0348 0.47 +2.4
422,468 - PP_0348 0.47 +0.4
422,611 + PP_0348 0.52 +2.8
422,620 + PP_0348 0.52 -0.4
422,621 - PP_0348 0.52 +0.6
422,662 + PP_0348 0.54 +1.9
422,663 - PP_0348 0.54 +0.3
422,833 + PP_0348 0.60 +1.2
422,833 + PP_0348 0.60 +2.2
422,834 - PP_0348 0.60 +0.2
422,834 - PP_0348 0.60 +0.4
422,834 - PP_0348 0.60 -1.8
422,834 - PP_0348 0.60 +2.2
422,842 + PP_0348 0.60 +1.5
422,842 + PP_0348 0.60 +2.9
422,842 + PP_0348 0.60 +0.9
422,842 + PP_0348 0.60 -3.1
422,842 + PP_0348 0.60 +2.9
422,843 - PP_0348 0.60 +3.2
422,843 - PP_0348 0.60 +2.2
422,843 - PP_0348 0.60 -0.5
422,843 - PP_0348 0.60 -0.0
422,843 - PP_0348 0.60 -0.8
422,892 + PP_0348 0.62 -0.3
422,987 + PP_0348 0.66 +0.5
422,988 - PP_0348 0.66 +0.7
423,078 - PP_0348 0.69 -0.0
423,078 - PP_0348 0.69 +0.9
423,078 - PP_0348 0.69 -0.6
423,101 + PP_0348 0.70 -0.3
423,101 + PP_0348 0.70 -0.7
423,101 + PP_0348 0.70 +1.2
423,101 + PP_0348 0.70 +0.4
423,102 - PP_0348 0.70 -2.1
423,102 - PP_0348 0.70 -1.5
423,102 - PP_0348 0.70 -0.4
423,200 + PP_0348 0.73 +0.7
423,200 + PP_0348 0.73 +0.9
423,200 + PP_0348 0.73 +0.1
423,200 + PP_0348 0.73 -2.2
423,200 + PP_0348 0.73 +2.7
423,201 - PP_0348 0.73 -1.5
423,201 - PP_0348 0.73 -1.6
423,201 - PP_0348 0.73 -0.4
423,204 + PP_0348 0.73 +0.3
423,205 - PP_0348 0.73 -0.1
423,205 - PP_0348 0.73 +2.1
423,276 + PP_0348 0.76 +0.9
423,277 - PP_0348 0.76 -0.5
423,277 - PP_0348 0.76 -2.5
423,277 - PP_0348 0.76 -0.7
423,325 + PP_0348 0.78 +0.9
423,326 - PP_0348 0.78 -2.7
423,326 - PP_0348 0.78 -2.7
423,373 + PP_0348 0.79 -1.1
423,373 + PP_0348 0.79 +2.4
423,568 + PP_0348 0.86 -0.1
423,569 - PP_0348 0.86 +0.8
423,638 + PP_0348 0.89 -0.4
423,638 + PP_0348 0.89 -0.7
423,638 + PP_0348 0.89 -1.5
423,638 + PP_0348 0.89 +2.9
423,639 - PP_0348 0.89 +0.3
423,639 - PP_0348 0.89 -0.3
423,639 - PP_0348 0.89 +0.0
423,639 - PP_0348 0.89 -0.8
423,639 - PP_0348 0.89 +0.9
423,681 + +0.9
423,681 + +0.9
423,681 + +0.9
423,681 + +3.8
423,682 - -0.5
423,988 + -1.5
423,989 - +0.6
424,244 - -1.1
424,244 - -0.7
424,319 - PP_0349 0.11 +0.9
424,363 + PP_0349 0.15 +0.9
424,416 + PP_0349 0.20 -0.3
424,417 - PP_0349 0.20 -0.5
424,472 - PP_0349 0.25 -3.4
424,472 - PP_0349 0.25 -2.3
424,472 - PP_0349 0.25 -2.6
424,674 + PP_0349 0.43 +1.2
424,774 - PP_0349 0.52 -2.7
424,810 + PP_0349 0.55 -0.5
424,810 + PP_0349 0.55 -1.6
424,811 - PP_0349 0.55 -1.2
424,848 + PP_0349 0.58 +1.9
424,848 + PP_0349 0.58 -1.3
424,849 - PP_0349 0.59 -0.6
424,849 - PP_0349 0.59 -0.9

Or see this region's nucleotide sequence