Strain Fitness in Pseudomonas putida KT2440 around PP_0208

Experiment: pH 8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0207 and PP_0208 are separated by 15 nucleotidesPP_0208 and PP_0209 overlap by 1 nucleotidesPP_0209 and PP_0210 overlap by 4 nucleotides PP_0207: PP_0207 - putative Nitrate ABC transporter, periplasmic nitrate-binding protein, at 258,467 to 259,873 _0207 PP_0208: PP_0208 - putative Nitrate ABC transporter, permease protein, at 259,889 to 260,671 _0208 PP_0209: PP_0209 - ATP-binding taurine transporter subunit, at 260,671 to 261,522 _0209 PP_0210: PP_0210 - putative Phycobiliprotein, at 261,519 to 262,484 _0210 Position (kb) 259 260 261Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 258.908 kb on + strand, within PP_0207at 259.080 kb on + strand, within PP_0207at 259.080 kb on + strand, within PP_0207at 259.080 kb on + strand, within PP_0207at 259.080 kb on + strand, within PP_0207at 259.113 kb on - strand, within PP_0207at 259.113 kb on - strand, within PP_0207at 259.113 kb on - strandat 259.181 kb on + strand, within PP_0207at 259.181 kb on + strand, within PP_0207at 259.182 kb on - strand, within PP_0207at 259.203 kb on - strand, within PP_0207at 259.256 kb on + strand, within PP_0207at 259.257 kb on - strand, within PP_0207at 259.305 kb on - strand, within PP_0207at 259.305 kb on - strand, within PP_0207at 259.379 kb on - strand, within PP_0207at 259.379 kb on - strand, within PP_0207at 259.379 kb on - strand, within PP_0207at 259.379 kb on - strand, within PP_0207at 259.379 kb on - strand, within PP_0207at 259.390 kb on + strand, within PP_0207at 259.390 kb on + strand, within PP_0207at 259.455 kb on - strand, within PP_0207at 259.455 kb on - strand, within PP_0207at 259.511 kb on + strand, within PP_0207at 259.511 kb on + strand, within PP_0207at 259.512 kb on - strand, within PP_0207at 259.519 kb on - strand, within PP_0207at 259.691 kb on + strand, within PP_0207at 260.003 kb on + strand, within PP_0208at 260.003 kb on + strand, within PP_0208at 260.003 kb on + strand, within PP_0208at 260.003 kb on + strand, within PP_0208at 260.003 kb on + strand, within PP_0208at 260.003 kb on + strand, within PP_0208at 260.003 kb on + strand, within PP_0208at 260.003 kb on + strand, within PP_0208at 260.003 kb on + strand, within PP_0208at 260.003 kb on + strand, within PP_0208at 260.003 kb on + strand, within PP_0208at 260.004 kb on - strand, within PP_0208at 260.004 kb on - strand, within PP_0208at 260.004 kb on - strand, within PP_0208at 260.004 kb on - strand, within PP_0208at 260.004 kb on - strand, within PP_0208at 260.004 kb on - strand, within PP_0208at 260.004 kb on - strand, within PP_0208at 260.011 kb on + strand, within PP_0208at 260.012 kb on - strand, within PP_0208at 260.012 kb on - strand, within PP_0208at 260.097 kb on + strand, within PP_0208at 260.098 kb on - strand, within PP_0208at 260.098 kb on - strand, within PP_0208at 260.108 kb on + strand, within PP_0208at 260.109 kb on - strand, within PP_0208at 260.176 kb on + strand, within PP_0208at 260.177 kb on - strand, within PP_0208at 260.409 kb on + strand, within PP_0208at 260.409 kb on + strand, within PP_0208at 260.410 kb on - strand, within PP_0208at 260.461 kb on + strand, within PP_0208at 260.461 kb on + strand, within PP_0208at 260.461 kb on + strand, within PP_0208at 260.462 kb on - strand, within PP_0208at 260.462 kb on - strand, within PP_0208at 260.462 kb on - strand, within PP_0208at 260.520 kb on - strand, within PP_0208at 260.522 kb on + strand, within PP_0208at 260.522 kb on + strand, within PP_0208at 260.522 kb on + strand, within PP_0208at 260.523 kb on - strand, within PP_0208at 260.523 kb on - strand, within PP_0208at 260.523 kb on - strand, within PP_0208at 260.537 kb on + strand, within PP_0208at 260.537 kb on + strand, within PP_0208at 260.537 kb on + strand, within PP_0208at 260.538 kb on - strand, within PP_0208at 260.649 kb on - strandat 260.680 kb on + strandat 260.700 kb on + strandat 260.964 kb on + strand, within PP_0209at 260.965 kb on - strand, within PP_0209at 261.229 kb on - strand, within PP_0209at 261.229 kb on - strand, within PP_0209at 261.411 kb on + strand, within PP_0209at 261.411 kb on + strand, within PP_0209at 261.411 kb on + strand, within PP_0209at 261.412 kb on - strand, within PP_0209at 261.518 kb on + strandat 261.518 kb on + strandat 261.519 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pH 8
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258,908 + PP_0207 0.31 +2.4
259,080 + PP_0207 0.44 -1.0
259,080 + PP_0207 0.44 +1.1
259,080 + PP_0207 0.44 -1.7
259,080 + PP_0207 0.44 -1.5
259,113 - PP_0207 0.46 -1.1
259,113 - PP_0207 0.46 -2.8
259,113 - +0.3
259,181 + PP_0207 0.51 -1.2
259,181 + PP_0207 0.51 +1.3
259,182 - PP_0207 0.51 -0.4
259,203 - PP_0207 0.52 +0.3
259,256 + PP_0207 0.56 -0.6
259,257 - PP_0207 0.56 +0.6
259,305 - PP_0207 0.60 +1.3
259,305 - PP_0207 0.60 -1.1
259,379 - PP_0207 0.65 -1.5
259,379 - PP_0207 0.65 -0.6
259,379 - PP_0207 0.65 -0.7
259,379 - PP_0207 0.65 +0.4
259,379 - PP_0207 0.65 -1.8
259,390 + PP_0207 0.66 +0.8
259,390 + PP_0207 0.66 +1.8
259,455 - PP_0207 0.70 +0.8
259,455 - PP_0207 0.70 +0.4
259,511 + PP_0207 0.74 -1.7
259,511 + PP_0207 0.74 +0.3
259,512 - PP_0207 0.74 +0.8
259,519 - PP_0207 0.75 +1.8
259,691 + PP_0207 0.87 -1.2
260,003 + PP_0208 0.15 +4.0
260,003 + PP_0208 0.15 -0.6
260,003 + PP_0208 0.15 -0.2
260,003 + PP_0208 0.15 +3.4
260,003 + PP_0208 0.15 +1.5
260,003 + PP_0208 0.15 +1.2
260,003 + PP_0208 0.15 +0.8
260,003 + PP_0208 0.15 +0.3
260,003 + PP_0208 0.15 +3.4
260,003 + PP_0208 0.15 -0.2
260,003 + PP_0208 0.15 -0.7
260,004 - PP_0208 0.15 -0.7
260,004 - PP_0208 0.15 +0.1
260,004 - PP_0208 0.15 +0.8
260,004 - PP_0208 0.15 -0.6
260,004 - PP_0208 0.15 +2.8
260,004 - PP_0208 0.15 +1.5
260,004 - PP_0208 0.15 +0.4
260,011 + PP_0208 0.16 -1.3
260,012 - PP_0208 0.16 -0.8
260,012 - PP_0208 0.16 -0.9
260,097 + PP_0208 0.27 -0.4
260,098 - PP_0208 0.27 +0.0
260,098 - PP_0208 0.27 +2.4
260,108 + PP_0208 0.28 -2.2
260,109 - PP_0208 0.28 +3.2
260,176 + PP_0208 0.37 +0.6
260,177 - PP_0208 0.37 +2.4
260,409 + PP_0208 0.66 +3.8
260,409 + PP_0208 0.66 -0.7
260,410 - PP_0208 0.67 -1.3
260,461 + PP_0208 0.73 +1.8
260,461 + PP_0208 0.73 +2.2
260,461 + PP_0208 0.73 +0.8
260,462 - PP_0208 0.73 +1.0
260,462 - PP_0208 0.73 +2.5
260,462 - PP_0208 0.73 +0.8
260,520 - PP_0208 0.81 +3.5
260,522 + PP_0208 0.81 +1.6
260,522 + PP_0208 0.81 -0.6
260,522 + PP_0208 0.81 +0.8
260,523 - PP_0208 0.81 -1.6
260,523 - PP_0208 0.81 +2.6
260,523 - PP_0208 0.81 +2.4
260,537 + PP_0208 0.83 +0.8
260,537 + PP_0208 0.83 +0.8
260,537 + PP_0208 0.83 +0.8
260,538 - PP_0208 0.83 -0.8
260,649 - -3.7
260,680 + -1.3
260,700 + -3.3
260,964 + PP_0209 0.34 -1.2
260,965 - PP_0209 0.35 +0.8
261,229 - PP_0209 0.65 +1.3
261,229 - PP_0209 0.65 -2.9
261,411 + PP_0209 0.87 -0.5
261,411 + PP_0209 0.87 -0.2
261,411 + PP_0209 0.87 +1.3
261,412 - PP_0209 0.87 -1.1
261,518 + -1.5
261,518 + -0.7
261,519 - +2.7

Or see this region's nucleotide sequence