Experiment: pH 8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5432 and PP_5433 are separated by 69 nucleotides PP_5433 and PP_0202 are separated by 6 nucleotides PP_0202 and PP_0203 are separated by 170 nucleotides
PP_5432: PP_5432 - conserved protein of unknown function, at 251,821 to 252,063
_5432
PP_5433: PP_5433 - putative NADH:ubiquinone oxidoreductase subunit 2, at 252,133 to 252,771
_5433
PP_0202: PP_0202 - CBS domain-containing protein, at 252,778 to 253,215
_0202
PP_0203: PP_0203 - putative dipeptidase, at 253,386 to 255,116
_0203
Position (kb) 252
253
254 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 251.889 kb on + strand, within PP_5432 at 252.101 kb on + strand at 252.101 kb on + strand at 252.101 kb on + strand at 252.102 kb on - strand at 252.102 kb on - strand at 252.102 kb on - strand at 252.102 kb on - strand at 252.119 kb on - strand at 252.199 kb on + strand, within PP_5433 at 252.199 kb on + strand, within PP_5433 at 252.200 kb on - strand, within PP_5433 at 252.205 kb on + strand, within PP_5433 at 252.205 kb on + strand, within PP_5433 at 252.205 kb on + strand, within PP_5433 at 252.206 kb on - strand, within PP_5433 at 252.206 kb on - strand, within PP_5433 at 252.253 kb on + strand, within PP_5433 at 252.375 kb on + strand, within PP_5433 at 252.376 kb on - strand, within PP_5433 at 252.376 kb on - strand, within PP_5433 at 252.419 kb on - strand, within PP_5433 at 252.433 kb on + strand, within PP_5433 at 252.433 kb on + strand, within PP_5433 at 252.433 kb on + strand, within PP_5433 at 252.433 kb on + strand, within PP_5433 at 252.434 kb on - strand, within PP_5433 at 252.622 kb on + strand, within PP_5433 at 252.623 kb on - strand, within PP_5433 at 252.623 kb on - strand, within PP_5433 at 252.623 kb on - strand, within PP_5433 at 252.666 kb on + strand, within PP_5433 at 252.703 kb on + strand, within PP_5433 at 252.703 kb on + strand, within PP_5433 at 252.704 kb on - strand, within PP_5433 at 252.704 kb on - strand, within PP_5433 at 252.726 kb on + strand at 252.726 kb on + strand at 252.727 kb on - strand at 252.794 kb on + strand at 252.794 kb on + strand at 252.795 kb on - strand at 253.043 kb on + strand, within PP_0202 at 253.043 kb on + strand, within PP_0202 at 253.163 kb on + strand, within PP_0202 at 253.164 kb on - strand, within PP_0202 at 253.164 kb on - strand, within PP_0202 at 253.164 kb on - strand, within PP_0202 at 253.215 kb on + strand at 253.215 kb on + strand at 253.216 kb on - strand at 253.254 kb on - strand at 253.257 kb on + strand at 253.258 kb on - strand at 253.258 kb on - strand at 253.258 kb on - strand at 253.340 kb on - strand at 253.493 kb on - strand at 253.568 kb on + strand, within PP_0203 at 253.883 kb on - strand, within PP_0203 at 253.926 kb on - strand, within PP_0203 at 253.982 kb on + strand, within PP_0203 at 253.982 kb on + strand, within PP_0203 at 253.982 kb on + strand, within PP_0203 at 253.982 kb on + strand, within PP_0203 at 254.110 kb on + strand, within PP_0203 at 254.110 kb on + strand at 254.110 kb on + strand, within PP_0203 at 254.111 kb on - strand, within PP_0203 at 254.111 kb on - strand, within PP_0203
Per-strain Table
Position Strand Gene LocusTag Fraction pH 8 remove 251,889 + PP_5432 0.28 +0.8 252,101 + -1.5 252,101 + -0.3 252,101 + -0.7 252,102 - +1.1 252,102 - -1.2 252,102 - +0.1 252,102 - -2.3 252,119 - +2.5 252,199 + PP_5433 0.10 +1.5 252,199 + PP_5433 0.10 -0.2 252,200 - PP_5433 0.10 +0.3 252,205 + PP_5433 0.11 -0.3 252,205 + PP_5433 0.11 +0.4 252,205 + PP_5433 0.11 -0.9 252,206 - PP_5433 0.11 -1.0 252,206 - PP_5433 0.11 +0.8 252,253 + PP_5433 0.19 +0.1 252,375 + PP_5433 0.38 +3.3 252,376 - PP_5433 0.38 +1.7 252,376 - PP_5433 0.38 -1.7 252,419 - PP_5433 0.45 +3.8 252,433 + PP_5433 0.47 -0.1 252,433 + PP_5433 0.47 +3.8 252,433 + PP_5433 0.47 -1.6 252,433 + PP_5433 0.47 -0.2 252,434 - PP_5433 0.47 +0.5 252,622 + PP_5433 0.77 +2.4 252,623 - PP_5433 0.77 -0.2 252,623 - PP_5433 0.77 -1.5 252,623 - PP_5433 0.77 +0.8 252,666 + PP_5433 0.83 +1.8 252,703 + PP_5433 0.89 -2.2 252,703 + PP_5433 0.89 +0.8 252,704 - PP_5433 0.89 -1.2 252,704 - PP_5433 0.89 +0.0 252,726 + +0.8 252,726 + -1.7 252,727 - -1.1 252,794 + +1.8 252,794 + +0.1 252,795 - +0.8 253,043 + PP_0202 0.61 -1.2 253,043 + PP_0202 0.61 -3.1 253,163 + PP_0202 0.88 -0.9 253,164 - PP_0202 0.88 -0.9 253,164 - PP_0202 0.88 -1.0 253,164 - PP_0202 0.88 -1.5 253,215 + +2.4 253,215 + +1.1 253,216 - -0.5 253,254 - +0.4 253,257 + +0.1 253,258 - -0.9 253,258 - +0.1 253,258 - +1.4 253,340 - -0.5 253,493 - +1.0 253,568 + PP_0203 0.11 +1.5 253,883 - PP_0203 0.29 -0.9 253,926 - PP_0203 0.31 +0.9 253,982 + PP_0203 0.34 +1.8 253,982 + PP_0203 0.34 +0.3 253,982 + PP_0203 0.34 -0.2 253,982 + PP_0203 0.34 -1.0 254,110 + PP_0203 0.42 -0.4 254,110 + +0.8 254,110 + PP_0203 0.42 -0.9 254,111 - PP_0203 0.42 -2.5 254,111 - PP_0203 0.42 -2.6
Or see this region's nucleotide sequence