Strain Fitness in Pseudomonas putida KT2440 around PP_0106

Experiment: pH 8

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 8
111,163	+		PP_0104	0.74	+0.2
111,163	+		PP_0104	0.74	-1.7
111,163	+		PP_0104	0.74	-0.2
111,163	+		PP_0104	0.74	+4.6
111,163	+		PP_0104	0.74	-2.0
111,164	-		PP_0104	0.74	-0.3
111,164	-		PP_0104	0.74	+0.3
111,167	+		PP_0104	0.75	+0.7
111,167	+		PP_0104	0.75	-0.9
111,167	+		PP_0104	0.75	+2.8
111,167	+		PP_0104	0.75	+0.5
111,167	+		PP_0104	0.75	-2.1
111,168	-		PP_0104	0.75	-1.2
111,168	-		PP_0104	0.75	+0.3
111,168	-		PP_0104	0.75	+0.5
111,208	+		PP_0104	0.77	-0.2
111,241	+		PP_0104	0.79	-1.2
111,242	-		PP_0104	0.79	+0.8
111,242	-		PP_0104	0.79	-2.5
111,242	-		PP_0104	0.79	-0.5
111,320	+		PP_0104	0.84	+3.4
111,320	+		PP_0104	0.84	-0.5
111,355	+		PP_0104	0.86	+1.6
111,535	+				+0.3
111,569	-				+0.8
111,569	-				+0.8
111,670	+		PP_0105	0.16	-1.2
111,671	-		PP_0105	0.16	-1.7
111,696	+		PP_0105	0.20	+3.4
111,721	+		PP_0105	0.25	-1.8
111,721	+		PP_0105	0.25	+0.2
111,808	+		PP_0105	0.40	-1.4
111,808	+		PP_0105	0.40	-0.7
111,809	-		PP_0105	0.40	-0.3
111,809	-		PP_0105	0.40	+0.4
111,909	-		PP_0105	0.58	-2.2
111,919	-		PP_0105	0.60	+0.5
111,970	-		PP_0105	0.69	-0.6
112,069	+		PP_0105	0.86	-3.6
112,181	+				-2.0
112,181	+				-1.2
112,181	+				-0.6
112,181	+				+2.0
112,182	-				+0.8
112,182	-				+1.8
112,182	-				+0.3
112,182	-				-0.4
112,182	-				+1.1
112,184	+				-2.1
112,184	+				+0.2
112,185	-				+1.6
112,185	-				+0.2
112,185	-				+1.3
112,185	-				-1.0
112,185	-				+0.4
112,185	-				-2.4
112,337	+		PP_0106	0.20	+0.1
112,337	+		PP_0106	0.20	+1.8
112,337	+		PP_0106	0.20	+0.5
112,338	-		PP_0106	0.20	+0.1
112,392	-		PP_0106	0.26	-1.2
112,487	+		PP_0106	0.36	+4.8
112,488	-		PP_0106	0.37	+1.8
112,488	-		PP_0106	0.37	-0.0
112,488	-		PP_0106	0.37	+0.8
112,488	-		PP_0106	0.37	+1.8
112,497	+		PP_0106	0.38	+2.8
112,778	-		PP_0106	0.69	-0.3
112,799	+		PP_0106	0.72	+0.0
112,799	+		PP_0106	0.72	+0.4
112,800	-		PP_0106	0.72	+0.5
112,802	+		PP_0106	0.72	+2.3
112,802	+		PP_0106	0.72	+0.3
112,802	+		PP_0106	0.72	-0.7
112,803	-		PP_0106	0.72	+1.0
112,811	+		PP_0106	0.73	-1.7
112,812	-		PP_0106	0.73	+0.4
112,814	-		PP_0106	0.73	+0.3
112,847	+		PP_0106	0.77	-2.4
112,848	-		PP_0106	0.77	+0.2
112,882	-		PP_0106	0.81	-0.7
112,991	+				-0.4
113,039	+				+4.2
113,039	+				+0.8
113,039	+				+0.8
113,040	-				+1.8
113,052	+				-0.4
113,065	-				+0.5
113,065	-				+0.8
113,139	+		PP_5427	0.28	-1.3
113,139	+		PP_5427	0.28	-3.6
113,139	+		PP_5427	0.28	-0.4
113,139	+		PP_5427	0.28	-2.5
113,139	+		PP_5427	0.28	-2.0
113,140	-		PP_5427	0.28	-0.0
113,140	-		PP_5427	0.28	-0.3
113,140	-		PP_5427	0.28	-0.6
113,140	-		PP_5427	0.28	-3.7
113,318	+				-0.6
113,318	+				+1.4
113,318	+				+1.1
113,319	-				-0.2
113,319	-				-0.2
113,323	-				+0.8
113,323	-				+0.8
113,323	-				-1.0
113,323	-				+0.8
113,325	-				-3.1
113,402	+				+0.4
113,402	+				-2.2
113,402	+				-0.8
113,403	-				-0.4
113,403	-				+0.9
113,460	+		PP_0107	0.17	-0.0
113,461	-		PP_0107	0.17	-1.5
113,461	-		PP_0107	0.17	+0.8
113,461	-		PP_0107	0.17	-2.0
113,461	-		PP_0107	0.17	+0.1
113,461	-		PP_0107	0.17	-1.2
113,461	-		PP_0107	0.17	+1.3
113,544	+		PP_0107	0.28	-2.2
113,544	+		PP_0107	0.28	-0.9
113,545	-		PP_0107	0.28	-0.9
113,545	-		PP_0107	0.28	+1.0
113,751	+		PP_0107	0.56	-0.4
113,751	+		PP_0107	0.56	+1.8
113,751	+		PP_0107	0.56	+0.7
113,752	-		PP_0107	0.56	-2.0
113,752	-		PP_0107	0.56	-0.8
113,842	+		PP_0107	0.68	+1.4
113,842	+		PP_0107	0.68	+1.8
113,958	+		PP_0107	0.84	+1.0
114,003	+				-1.2
114,003	+				+1.3
114,010	-				-1.0
114,010	-				-0.2