Strain Fitness in Agrobacterium fabrum C58 around Atu6061

Experiment: tannic 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu6060 and Atu6061 overlap by 4 nucleotidesAtu6061 and Atu6062 are separated by 157 nucleotides Atu6060: Atu6060 - nitrilotriacetate monooxygenase, at 71,649 to 72,524 Atu6060 Atu6061: Atu6061 - nitrilotriacetate monooxygenase, at 72,521 to 73,768 Atu6061 Atu6062: Atu6062 - 2-deoxy-D-gluconate 3-dehydrogenase, at 73,926 to 74,696 Atu6062 Position (kb) 72 73 74Strain fitness (log2 ratio) -1 0 1 2at 71.536 kb on - strandat 71.597 kb on - strandat 71.610 kb on + strandat 71.647 kb on - strandat 71.661 kb on - strandat 71.671 kb on + strandat 71.672 kb on - strandat 71.684 kb on - strandat 71.689 kb on - strandat 71.794 kb on + strand, within Atu6060at 71.816 kb on + strand, within Atu6060at 71.824 kb on - strand, within Atu6060at 71.829 kb on - strand, within Atu6060at 71.839 kb on - strand, within Atu6060at 71.863 kb on - strand, within Atu6060at 71.865 kb on + strand, within Atu6060at 71.870 kb on + strand, within Atu6060at 71.899 kb on + strand, within Atu6060at 71.907 kb on - strand, within Atu6060at 71.907 kb on - strand, within Atu6060at 71.909 kb on + strand, within Atu6060at 71.909 kb on + strand, within Atu6060at 71.917 kb on - strand, within Atu6060at 71.956 kb on + strand, within Atu6060at 71.957 kb on + strand, within Atu6060at 71.965 kb on - strand, within Atu6060at 71.992 kb on + strand, within Atu6060at 72.003 kb on + strand, within Atu6060at 72.003 kb on + strand, within Atu6060at 72.011 kb on - strand, within Atu6060at 72.011 kb on - strand, within Atu6060at 72.011 kb on - strand, within Atu6060at 72.011 kb on - strand, within Atu6060at 72.013 kb on + strand, within Atu6060at 72.068 kb on + strand, within Atu6060at 72.082 kb on + strand, within Atu6060at 72.122 kb on + strand, within Atu6060at 72.122 kb on + strand, within Atu6060at 72.141 kb on + strand, within Atu6060at 72.141 kb on + strand, within Atu6060at 72.141 kb on + strand, within Atu6060at 72.141 kb on + strand, within Atu6060at 72.141 kb on + strand, within Atu6060at 72.141 kb on + strand, within Atu6060at 72.141 kb on + strand, within Atu6060at 72.149 kb on - strand, within Atu6060at 72.164 kb on - strand, within Atu6060at 72.164 kb on - strand, within Atu6060at 72.170 kb on + strand, within Atu6060at 72.178 kb on + strand, within Atu6060at 72.278 kb on + strand, within Atu6060at 72.278 kb on + strand, within Atu6060at 72.299 kb on - strand, within Atu6060at 72.341 kb on + strand, within Atu6060at 72.341 kb on + strand, within Atu6060at 72.341 kb on + strand, within Atu6060at 72.341 kb on + strand, within Atu6060at 72.341 kb on + strand, within Atu6060at 72.347 kb on - strand, within Atu6060at 72.349 kb on - strand, within Atu6060at 72.389 kb on + strand, within Atu6060at 72.411 kb on + strand, within Atu6060at 72.418 kb on + strand, within Atu6060at 72.430 kb on + strand, within Atu6060at 72.431 kb on - strand, within Atu6060at 72.438 kb on - strandat 72.438 kb on - strandat 72.438 kb on - strandat 72.476 kb on - strandat 72.476 kb on - strandat 72.498 kb on - strandat 72.542 kb on + strandat 72.542 kb on + strandat 72.550 kb on - strandat 72.579 kb on - strandat 72.653 kb on + strand, within Atu6061at 72.713 kb on + strand, within Atu6061at 72.713 kb on + strand, within Atu6061at 72.715 kb on + strand, within Atu6061at 72.751 kb on + strand, within Atu6061at 72.802 kb on + strand, within Atu6061at 72.844 kb on - strand, within Atu6061at 72.851 kb on + strand, within Atu6061at 72.862 kb on + strand, within Atu6061at 72.881 kb on + strand, within Atu6061at 72.881 kb on + strand, within Atu6061at 72.881 kb on + strand, within Atu6061at 72.889 kb on - strand, within Atu6061at 72.889 kb on - strand, within Atu6061at 72.889 kb on - strand, within Atu6061at 72.889 kb on - strand, within Atu6061at 72.889 kb on - strand, within Atu6061at 72.954 kb on - strand, within Atu6061at 72.960 kb on + strand, within Atu6061at 72.976 kb on + strand, within Atu6061at 72.981 kb on + strand, within Atu6061at 72.981 kb on + strand, within Atu6061at 72.986 kb on + strand, within Atu6061at 72.986 kb on + strand, within Atu6061at 72.989 kb on - strand, within Atu6061at 72.989 kb on - strand, within Atu6061at 72.989 kb on - strand, within Atu6061at 72.994 kb on - strand, within Atu6061at 73.029 kb on + strand, within Atu6061at 73.029 kb on + strand, within Atu6061at 73.052 kb on + strand, within Atu6061at 73.052 kb on + strand, within Atu6061at 73.052 kb on + strand, within Atu6061at 73.052 kb on + strand, within Atu6061at 73.060 kb on - strand, within Atu6061at 73.060 kb on - strand, within Atu6061at 73.067 kb on + strand, within Atu6061at 73.078 kb on + strand, within Atu6061at 73.114 kb on + strand, within Atu6061at 73.132 kb on + strand, within Atu6061at 73.168 kb on + strand, within Atu6061at 73.227 kb on + strand, within Atu6061at 73.227 kb on + strand, within Atu6061at 73.235 kb on - strand, within Atu6061at 73.235 kb on - strand, within Atu6061at 73.235 kb on - strand, within Atu6061at 73.257 kb on + strand, within Atu6061at 73.265 kb on - strand, within Atu6061at 73.322 kb on + strand, within Atu6061at 73.328 kb on - strand, within Atu6061at 73.330 kb on - strand, within Atu6061at 73.347 kb on + strand, within Atu6061at 73.411 kb on + strand, within Atu6061at 73.477 kb on - strand, within Atu6061at 73.497 kb on - strand, within Atu6061at 73.593 kb on + strand, within Atu6061at 73.601 kb on - strand, within Atu6061at 73.601 kb on - strand, within Atu6061at 73.601 kb on - strand, within Atu6061at 73.642 kb on + strand, within Atu6061at 73.653 kb on + strandat 73.665 kb on - strandat 73.700 kb on - strandat 73.706 kb on - strandat 73.706 kb on - strandat 73.716 kb on + strandat 73.721 kb on + strandat 73.724 kb on - strandat 73.755 kb on - strandat 73.755 kb on - strandat 73.755 kb on - strandat 73.779 kb on + strandat 73.779 kb on + strandat 73.787 kb on - strandat 73.792 kb on - strandat 73.827 kb on + strandat 73.898 kb on - strandat 73.918 kb on + strandat 73.936 kb on - strandat 73.962 kb on - strandat 73.963 kb on + strandat 73.963 kb on + strandat 74.084 kb on - strand, within Atu6062at 74.086 kb on + strand, within Atu6062at 74.094 kb on - strand, within Atu6062at 74.094 kb on - strand, within Atu6062at 74.094 kb on - strand, within Atu6062at 74.101 kb on - strand, within Atu6062at 74.122 kb on + strand, within Atu6062at 74.269 kb on + strand, within Atu6062at 74.311 kb on + strand, within Atu6062at 74.323 kb on + strand, within Atu6062at 74.438 kb on + strand, within Atu6062at 74.439 kb on + strand, within Atu6062at 74.439 kb on + strand, within Atu6062at 74.444 kb on + strand, within Atu6062at 74.466 kb on - strand, within Atu6062at 74.539 kb on + strand, within Atu6062at 74.547 kb on - strand, within Atu6062at 74.547 kb on - strand, within Atu6062at 74.547 kb on - strand, within Atu6062at 74.567 kb on + strand, within Atu6062at 74.656 kb on + strandat 74.724 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction tannic 1 mM
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71,536 - +0.5
71,597 - +0.3
71,610 + -0.1
71,647 - +0.1
71,661 - +0.5
71,671 + +0.2
71,672 - -1.2
71,684 - +0.3
71,689 - +0.0
71,794 + Atu6060 0.17 +0.1
71,816 + Atu6060 0.19 -0.4
71,824 - Atu6060 0.20 -0.8
71,829 - Atu6060 0.21 -0.3
71,839 - Atu6060 0.22 +0.1
71,863 - Atu6060 0.24 -0.2
71,865 + Atu6060 0.25 +0.0
71,870 + Atu6060 0.25 -0.0
71,899 + Atu6060 0.29 +0.7
71,907 - Atu6060 0.29 +0.7
71,907 - Atu6060 0.29 -1.6
71,909 + Atu6060 0.30 -0.4
71,909 + Atu6060 0.30 +0.1
71,917 - Atu6060 0.31 -0.1
71,956 + Atu6060 0.35 +0.2
71,957 + Atu6060 0.35 +0.1
71,965 - Atu6060 0.36 +1.3
71,992 + Atu6060 0.39 -0.6
72,003 + Atu6060 0.40 -0.2
72,003 + Atu6060 0.40 -0.2
72,011 - Atu6060 0.41 -0.3
72,011 - Atu6060 0.41 +0.1
72,011 - Atu6060 0.41 -0.9
72,011 - Atu6060 0.41 -0.2
72,013 + Atu6060 0.42 -0.2
72,068 + Atu6060 0.48 -1.6
72,082 + Atu6060 0.49 +0.8
72,122 + Atu6060 0.54 -0.1
72,122 + Atu6060 0.54 -0.1
72,141 + Atu6060 0.56 -0.1
72,141 + Atu6060 0.56 -0.1
72,141 + Atu6060 0.56 -0.3
72,141 + Atu6060 0.56 -0.3
72,141 + Atu6060 0.56 +0.6
72,141 + Atu6060 0.56 -0.5
72,141 + Atu6060 0.56 -0.3
72,149 - Atu6060 0.57 -0.1
72,164 - Atu6060 0.59 +0.3
72,164 - Atu6060 0.59 +0.1
72,170 + Atu6060 0.59 +1.0
72,178 + Atu6060 0.60 -0.2
72,278 + Atu6060 0.72 +0.1
72,278 + Atu6060 0.72 -0.2
72,299 - Atu6060 0.74 -0.2
72,341 + Atu6060 0.79 +0.2
72,341 + Atu6060 0.79 -0.2
72,341 + Atu6060 0.79 +0.0
72,341 + Atu6060 0.79 +0.3
72,341 + Atu6060 0.79 -0.2
72,347 - Atu6060 0.80 -0.7
72,349 - Atu6060 0.80 +0.2
72,389 + Atu6060 0.84 -0.4
72,411 + Atu6060 0.87 -0.0
72,418 + Atu6060 0.88 -0.3
72,430 + Atu6060 0.89 -0.2
72,431 - Atu6060 0.89 -0.5
72,438 - +0.3
72,438 - +0.6
72,438 - -0.2
72,476 - +1.5
72,476 - +0.1
72,498 - -0.2
72,542 + -0.0
72,542 + -0.1
72,550 - +0.7
72,579 - -1.6
72,653 + Atu6061 0.11 -0.7
72,713 + Atu6061 0.15 -0.1
72,713 + Atu6061 0.15 +0.0
72,715 + Atu6061 0.16 +0.2
72,751 + Atu6061 0.18 +0.9
72,802 + Atu6061 0.23 +2.4
72,844 - Atu6061 0.26 +0.2
72,851 + Atu6061 0.26 -0.4
72,862 + Atu6061 0.27 -0.1
72,881 + Atu6061 0.29 -0.2
72,881 + Atu6061 0.29 -0.7
72,881 + Atu6061 0.29 +0.1
72,889 - Atu6061 0.29 -0.1
72,889 - Atu6061 0.29 -0.1
72,889 - Atu6061 0.29 -0.4
72,889 - Atu6061 0.29 +1.5
72,889 - Atu6061 0.29 +0.2
72,954 - Atu6061 0.35 +0.3
72,960 + Atu6061 0.35 +0.4
72,976 + Atu6061 0.36 -0.2
72,981 + Atu6061 0.37 -0.8
72,981 + Atu6061 0.37 +0.5
72,986 + Atu6061 0.37 +0.2
72,986 + Atu6061 0.37 -0.2
72,989 - Atu6061 0.38 -0.5
72,989 - Atu6061 0.38 +0.0
72,989 - Atu6061 0.38 -0.8
72,994 - Atu6061 0.38 -0.3
73,029 + Atu6061 0.41 -0.3
73,029 + Atu6061 0.41 +0.0
73,052 + Atu6061 0.43 -0.1
73,052 + Atu6061 0.43 +2.2
73,052 + Atu6061 0.43 +1.2
73,052 + Atu6061 0.43 -0.5
73,060 - Atu6061 0.43 +0.8
73,060 - Atu6061 0.43 -0.1
73,067 + Atu6061 0.44 -0.1
73,078 + Atu6061 0.45 -0.4
73,114 + Atu6061 0.48 +0.7
73,132 + Atu6061 0.49 +0.2
73,168 + Atu6061 0.52 +0.1
73,227 + Atu6061 0.57 -0.5
73,227 + Atu6061 0.57 +0.2
73,235 - Atu6061 0.57 -0.2
73,235 - Atu6061 0.57 -0.4
73,235 - Atu6061 0.57 +0.3
73,257 + Atu6061 0.59 -0.2
73,265 - Atu6061 0.60 -0.1
73,322 + Atu6061 0.64 +0.1
73,328 - Atu6061 0.65 -0.1
73,330 - Atu6061 0.65 -0.8
73,347 + Atu6061 0.66 -0.1
73,411 + Atu6061 0.71 -0.4
73,477 - Atu6061 0.77 -0.0
73,497 - Atu6061 0.78 +0.1
73,593 + Atu6061 0.86 +0.2
73,601 - Atu6061 0.87 +0.5
73,601 - Atu6061 0.87 -0.2
73,601 - Atu6061 0.87 -0.3
73,642 + Atu6061 0.90 -0.6
73,653 + -0.7
73,665 - +1.0
73,700 - +0.2
73,706 - +1.5
73,706 - -0.2
73,716 + -1.0
73,721 + +0.7
73,724 - +0.1
73,755 - -0.7
73,755 - +1.2
73,755 - -0.1
73,779 + +1.1
73,779 + +0.8
73,787 - +0.1
73,792 - -1.1
73,827 + +1.2
73,898 - -0.0
73,918 + -0.1
73,936 - -0.6
73,962 - -0.5
73,963 + -0.2
73,963 + -0.6
74,084 - Atu6062 0.20 -0.2
74,086 + Atu6062 0.21 -1.1
74,094 - Atu6062 0.22 -0.8
74,094 - Atu6062 0.22 -0.9
74,094 - Atu6062 0.22 -0.3
74,101 - Atu6062 0.23 -0.1
74,122 + Atu6062 0.25 +0.3
74,269 + Atu6062 0.44 +0.3
74,311 + Atu6062 0.50 +0.8
74,323 + Atu6062 0.51 -0.2
74,438 + Atu6062 0.66 +0.1
74,439 + Atu6062 0.67 -0.3
74,439 + Atu6062 0.67 +0.1
74,444 + Atu6062 0.67 -0.7
74,466 - Atu6062 0.70 -0.2
74,539 + Atu6062 0.80 -0.2
74,547 - Atu6062 0.81 -0.2
74,547 - Atu6062 0.81 +0.3
74,547 - Atu6062 0.81 +1.8
74,567 + Atu6062 0.83 -0.0
74,656 + +0.9
74,724 + -0.4

Or see this region's nucleotide sequence