Strain Fitness in Agrobacterium fabrum C58 around Atu3688

Experiment: tannic 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3687 and Atu3688 are separated by 53 nucleotidesAtu3688 and Atu3689 overlap by 4 nucleotides Atu3687: Atu3687 - TonB-dependent receptor, at 760,897 to 763,335 Atu3687 Atu3688: Atu3688 - iron(III ABC transporter permease dicitrate ABC transporter permease, at 763,389 to 764,309 Atu3688 Atu3689: Atu3689 - iron(III ABC transporter permease dicitrate ABC transporter permease, at 764,306 to 765,355 Atu3689 Position (kb) 763 764 765Strain fitness (log2 ratio) -2 -1 0 1at 762.404 kb on - strand, within Atu3687at 762.419 kb on + strand, within Atu3687at 762.429 kb on + strand, within Atu3687at 762.437 kb on - strand, within Atu3687at 762.507 kb on - strand, within Atu3687at 762.507 kb on - strand, within Atu3687at 762.512 kb on - strand, within Atu3687at 762.572 kb on - strand, within Atu3687at 762.622 kb on + strand, within Atu3687at 762.676 kb on + strand, within Atu3687at 762.709 kb on + strand, within Atu3687at 762.709 kb on + strand, within Atu3687at 762.709 kb on + strand, within Atu3687at 762.799 kb on - strand, within Atu3687at 762.939 kb on + strand, within Atu3687at 762.939 kb on + strand, within Atu3687at 762.947 kb on - strand, within Atu3687at 762.974 kb on - strand, within Atu3687at 763.055 kb on + strand, within Atu3687at 763.073 kb on - strand, within Atu3687at 763.073 kb on - strand, within Atu3687at 763.160 kb on - strandat 763.190 kb on - strandat 763.453 kb on + strandat 763.476 kb on + strandat 763.484 kb on - strand, within Atu3688at 763.484 kb on - strand, within Atu3688at 763.609 kb on + strand, within Atu3688at 763.628 kb on + strand, within Atu3688at 763.950 kb on - strand, within Atu3688at 764.071 kb on + strand, within Atu3688at 764.378 kb on + strandat 764.448 kb on + strand, within Atu3689at 764.449 kb on + strand, within Atu3689at 764.462 kb on + strand, within Atu3689at 764.464 kb on - strand, within Atu3689at 764.470 kb on - strand, within Atu3689at 764.564 kb on + strand, within Atu3689at 764.834 kb on + strand, within Atu3689at 764.837 kb on - strand, within Atu3689at 764.866 kb on + strand, within Atu3689at 764.960 kb on - strand, within Atu3689at 765.000 kb on + strand, within Atu3689at 765.008 kb on - strand, within Atu3689at 765.050 kb on + strand, within Atu3689at 765.099 kb on + strand, within Atu3689at 765.107 kb on - strand, within Atu3689at 765.107 kb on - strand, within Atu3689at 765.290 kb on + strandat 765.298 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction tannic 1 mM
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762,404 - Atu3687 0.62 -0.7
762,419 + Atu3687 0.62 -0.3
762,429 + Atu3687 0.63 -0.7
762,437 - Atu3687 0.63 -0.0
762,507 - Atu3687 0.66 -0.3
762,507 - Atu3687 0.66 -0.7
762,512 - Atu3687 0.66 -2.0
762,572 - Atu3687 0.69 -0.1
762,622 + Atu3687 0.71 -1.2
762,676 + Atu3687 0.73 -1.2
762,709 + Atu3687 0.74 -1.3
762,709 + Atu3687 0.74 -0.4
762,709 + Atu3687 0.74 -0.6
762,799 - Atu3687 0.78 +0.3
762,939 + Atu3687 0.84 -0.3
762,939 + Atu3687 0.84 -0.2
762,947 - Atu3687 0.84 +0.3
762,974 - Atu3687 0.85 -0.1
763,055 + Atu3687 0.88 -0.7
763,073 - Atu3687 0.89 -1.5
763,073 - Atu3687 0.89 -1.8
763,160 - -1.1
763,190 - +1.0
763,453 + -0.2
763,476 + -2.6
763,484 - Atu3688 0.10 -1.1
763,484 - Atu3688 0.10 -0.5
763,609 + Atu3688 0.24 -1.1
763,628 + Atu3688 0.26 -0.7
763,950 - Atu3688 0.61 -1.4
764,071 + Atu3688 0.74 -0.9
764,378 + -0.2
764,448 + Atu3689 0.14 -1.0
764,449 + Atu3689 0.14 -0.6
764,462 + Atu3689 0.15 -0.6
764,464 - Atu3689 0.15 -0.6
764,470 - Atu3689 0.16 -0.8
764,564 + Atu3689 0.25 -1.7
764,834 + Atu3689 0.50 +0.2
764,837 - Atu3689 0.51 -0.4
764,866 + Atu3689 0.53 -0.0
764,960 - Atu3689 0.62 -0.1
765,000 + Atu3689 0.66 -0.5
765,008 - Atu3689 0.67 -1.3
765,050 + Atu3689 0.71 -0.8
765,099 + Atu3689 0.76 -0.5
765,107 - Atu3689 0.76 -0.3
765,107 - Atu3689 0.76 -0.8
765,290 + -0.1
765,298 - -0.8

Or see this region's nucleotide sequence