Strain Fitness in Pseudomonas putida KT2440 around PP_5536

Experiment: pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 7
2,885,224	-		PP_2540	0.89	+1.0
2,885,257	-				-0.2
2,885,307	+				-0.1
2,885,308	-				+3.1
2,885,581	-		PP_2541	0.46	+1.3
2,885,585	+		PP_2541	0.47	-0.2
2,885,585	+		PP_2541	0.47	-0.3
2,885,585	+		PP_2541	0.47	+1.1
2,885,585	+		PP_2541	0.47	-2.0
2,885,586	-		PP_2541	0.47	-0.1
2,885,586	-		PP_2541	0.47	+0.1
2,885,586	-		PP_2541	0.47	-1.9
2,885,606	-		PP_2541	0.51	-0.7
2,885,606	-		PP_2541	0.51	+1.7
2,885,606	-		PP_2541	0.51	-0.3
2,885,661	+		PP_2541	0.61	-0.1
2,885,662	-		PP_2541	0.61	-0.3
2,885,683	+		PP_2541	0.65	-0.6
2,885,683	+		PP_2541	0.65	+1.9
2,885,684	-		PP_2541	0.65	-1.9
2,885,684	-		PP_2541	0.65	+0.1
2,885,929	-				+1.4
2,885,929	-				-1.5
2,886,080	-				-1.0
2,886,110	+				+0.8
2,886,110	+				-1.4
2,886,111	-				+0.7
2,886,111	-				-0.2
2,886,114	-				+0.7
2,886,114	-				+0.4
2,886,114	-				-0.6
2,886,174	-				+0.3
2,886,174	-				+0.4
2,886,193	-				+0.8
2,886,193	-				-0.1
2,886,194	+				+0.9
2,886,194	+				+0.1
2,886,300	+		PP_5536	0.21	-1.5
2,886,300	+		PP_5536	0.21	-1.6
2,886,412	+		PP_5536	0.34	-2.2
2,886,474	-		PP_5536	0.41	-3.6
2,886,474	-		PP_5536	0.41	+1.3
2,886,477	+		PP_5536	0.41	+0.8
2,886,516	+		PP_5536	0.46	-0.1
2,886,520	+		PP_5536	0.46	+0.4
2,886,561	+		PP_5536	0.51	-1.5
2,886,562	-		PP_5536	0.51	+0.9
2,886,586	+		PP_5536	0.54	+4.4
2,886,586	+		PP_5536	0.54	+1.2
2,886,587	-		PP_5536	0.54	+1.0
2,886,605	+		PP_5536	0.56	+0.9
2,886,606	-		PP_5536	0.56	+1.6
2,886,606	-		PP_5536	0.56	+0.9
2,886,611	+		PP_5536	0.57	+1.5
2,886,621	+		PP_5536	0.58	-1.1
2,886,703	+		PP_5536	0.67	+1.2
2,886,704	-		PP_5536	0.67	+3.3
2,886,704	-		PP_5536	0.67	-1.5
2,886,704	-		PP_5536	0.67	-0.5
2,886,704	-		PP_5536	0.67	+1.9
2,886,710	+		PP_5536	0.68	-0.1
2,886,710	+		PP_5536	0.68	+2.8
2,886,710	+		PP_5536	0.68	-0.5
2,886,720	+		PP_5536	0.69	+0.4
2,886,720	+		PP_5536	0.69	-1.1
2,886,721	-		PP_5536	0.69	+0.3
2,886,734	+		PP_5536	0.71	+1.5
2,886,735	-		PP_5536	0.71	+1.4
2,886,826	+		PP_5536	0.81	+0.2
2,886,871	-		PP_5536	0.86	-1.1
2,886,979	-				-0.6
2,886,983	-				+0.0
2,886,986	+				+1.0
2,886,987	-				+0.6
2,886,988	+				+1.4
2,887,039	+				-1.4
2,887,084	+				+1.6
2,887,173	-				+0.7
2,887,245	+				+0.3
2,887,246	-				+0.4
2,887,246	-				+0.7
2,887,313	-				-1.1
2,887,383	-				+4.9
2,887,458	+		PP_2542	0.15	-0.1
2,887,458	+		PP_2542	0.15	+1.7
2,887,458	+		PP_2542	0.15	-0.1
2,887,458	+		PP_2542	0.15	+0.5
2,887,459	-		PP_2542	0.15	-0.9
2,887,459	-		PP_2542	0.15	+0.9
2,887,459	-		PP_2542	0.15	-0.3
2,887,459	-		PP_2542	0.15	+0.8
2,887,596	+		PP_2542	0.25	-1.0
2,887,597	-		PP_2542	0.25	+0.9
2,887,597	-		PP_2542	0.25	-0.5
2,887,597	-		PP_2542	0.25	+0.1
2,887,690	-		PP_2542	0.31	-1.9
2,887,725	+		PP_2542	0.34	-0.1
2,887,726	-		PP_2542	0.34	-0.9
2,887,726	-		PP_2542	0.34	-0.5
2,887,737	+		PP_2542	0.35	+0.1
2,887,737	+		PP_2542	0.35	+0.5
2,887,984	+		PP_2542	0.52	+1.2
2,887,985	-		PP_2542	0.52	-2.5