Strain Fitness in Pseudomonas putida KT2440 around PP_5527

Experiment: pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 7
2,817,727	+		PP_5526	0.62	+3.5
2,817,727	+		PP_5526	0.62	-1.4
2,817,727	+		PP_5526	0.62	+0.4
2,817,749	-		PP_5526	0.65	+1.2
2,817,846	-		PP_5526	0.76	+1.1
2,817,846	-		PP_5526	0.76	-1.4
2,817,846	-		PP_5526	0.76	-1.5
2,817,846	-		PP_5526	0.76	+2.5
2,817,848	+		PP_5526	0.77	-1.5
2,817,848	+		PP_5526	0.77	-3.4
2,817,977	+				+2.0
2,818,083	-				+0.1
2,818,139	-				+1.3
2,818,139	-				+0.5
2,818,196	+				-0.0
2,818,321	+				+0.2
2,818,400	+				+1.5
2,818,400	+				-0.6
2,818,401	-				-0.1
2,818,401	-				-1.0
2,818,401	-				-2.6
2,818,401	-				-2.9
2,818,464	+				-0.1
2,818,465	-				+2.0
2,818,492	-				+0.3
2,818,492	-				-1.1
2,818,536	+				-1.0
2,818,577	-				+0.9
2,818,607	-				+0.5
2,818,634	-				-0.9
2,818,634	-				-3.4
2,818,707	-		PP_5527	0.22	+2.3
2,818,707	-		PP_5527	0.22	+0.9
2,818,710	+		PP_5527	0.24	-1.5
2,818,710	+		PP_5527	0.24	-3.6
2,818,710	+		PP_5527	0.24	-0.9
2,818,711	-		PP_5527	0.24	+1.5
2,818,716	+		PP_5527	0.26	+1.4
2,818,716	+		PP_5527	0.26	+1.3
2,818,717	-				+1.5
2,818,753	+		PP_5527	0.40	-0.6
2,818,753	+		PP_5527	0.40	-1.8
2,818,753	+		PP_5527	0.40	+0.9
2,818,753	+		PP_5527	0.40	-0.3
2,818,754	-		PP_5527	0.41	-1.4
2,818,754	-		PP_5527	0.41	+1.1
2,818,754	-		PP_5527	0.41	+0.4
2,818,772	+		PP_5527	0.48	+0.2
2,818,773	-		PP_5527	0.48	+1.8
2,818,850	+		PP_5527	0.78	+2.1
2,818,943	+				+2.6
2,818,943	+				-1.1
2,818,975	+				+0.6
2,818,976	-				+0.1
2,818,976	-				-2.6
2,819,033	+				+0.4
2,819,034	-				+3.3
2,819,080	+				+0.4
2,819,088	+				+3.3
2,819,089	-				-0.4
2,819,092	+				-0.4
2,819,093	-				+0.4
2,819,093	-				+1.1
2,819,109	+				-0.3
2,819,174	+				-1.1
2,819,174	+				-3.4
2,819,200	+				-2.9
2,819,200	+				-1.5
2,819,200	+				+3.3
2,819,222	+				-1.5
2,819,222	+				-1.0
2,819,223	-				-1.8
2,819,223	-				+1.5
2,819,242	+				+3.5
2,819,274	+				-2.9
2,819,274	+				-1.6
2,819,275	-				+1.0
2,819,275	-				-1.4
2,819,275	-				+1.7
2,819,358	-		PP_2473	0.13	-1.0
2,819,414	+		PP_2473	0.19	+0.5
2,819,414	+		PP_2473	0.19	+1.0
2,819,415	-				+1.0
2,819,415	-		PP_2473	0.19	-1.2
2,819,415	-		PP_2473	0.19	-0.9
2,819,464	-		PP_2473	0.24	+0.8
2,819,464	-		PP_2473	0.24	+0.3
2,819,464	-		PP_2473	0.24	-2.4
2,819,543	+		PP_2473	0.32	+0.1
2,819,544	-		PP_2473	0.32	-2.2
2,819,544	-		PP_2473	0.32	-0.6
2,819,615	+		PP_2473	0.40	+0.1
2,819,735	+		PP_2473	0.52	+1.0
2,819,735	+		PP_2473	0.52	-0.2
2,819,736	-		PP_2473	0.52	+0.3
2,819,736	-				-0.0
2,819,736	-		PP_2473	0.52	+0.2
2,819,738	+		PP_2473	0.52	-1.4
2,819,738	+		PP_2473	0.52	+0.8
2,819,739	-		PP_2473	0.52	+2.8
2,819,803	+		PP_2473	0.59	-0.9
2,819,803	+		PP_2473	0.59	-0.2
2,819,803	+		PP_2473	0.59	-1.9
2,819,804	-		PP_2473	0.59	+1.5
2,819,846	+		PP_2473	0.63	-1.2
2,819,846	+		PP_2473	0.63	+2.2
2,819,847	-		PP_2473	0.64	-3.4
2,819,853	-		PP_2473	0.64	-1.0