Experiment: pH 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5384 and PP_5733 are separated by 36 nucleotides PP_5733 and PP_5385 are separated by 89 nucleotides PP_5385 and PP_5386 overlap by 4 nucleotides
PP_5384: PP_5384 - copper sensor protein, at 6,135,660 to 6,137,069
_5384
PP_5733: PP_5733 - putative metal-binding protein, at 6,137,106 to 6,137,456
_5733
PP_5385: PP_5385 - metal RND efflux outer membrane protein, CzcC family, at 6,137,546 to 6,138,799
_5385
PP_5386: PP_5386 - Probable copper RND efflux membrane fusion protein, CzcB family, at 6,138,796 to 6,140,268
_5386
Position (kb)
6137
6138
6139 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 6136.628 kb on - strand, within PP_5384 at 6136.635 kb on + strand, within PP_5384 at 6136.636 kb on - strand, within PP_5384 at 6136.636 kb on - strand, within PP_5384 at 6136.638 kb on + strand, within PP_5384 at 6136.638 kb on + strand, within PP_5384 at 6136.639 kb on - strand, within PP_5384 at 6136.639 kb on - strand, within PP_5384 at 6136.639 kb on - strand, within PP_5384 at 6136.666 kb on + strand, within PP_5384 at 6136.666 kb on + strand, within PP_5384 at 6136.736 kb on + strand, within PP_5384 at 6136.736 kb on + strand, within PP_5384 at 6136.736 kb on + strand, within PP_5384 at 6136.736 kb on + strand, within PP_5384 at 6136.737 kb on - strand, within PP_5384 at 6136.758 kb on + strand, within PP_5384 at 6136.759 kb on - strand, within PP_5384 at 6136.759 kb on - strand, within PP_5384 at 6136.759 kb on - strand, within PP_5384 at 6136.885 kb on - strand, within PP_5384 at 6136.919 kb on + strand, within PP_5384 at 6136.919 kb on + strand, within PP_5384 at 6136.919 kb on + strand, within PP_5384 at 6136.919 kb on + strand, within PP_5384 at 6136.919 kb on + strand, within PP_5384 at 6136.919 kb on + strand, within PP_5384 at 6136.919 kb on + strand, within PP_5384 at 6136.919 kb on + strand, within PP_5384 at 6136.920 kb on - strand, within PP_5384 at 6136.920 kb on - strand, within PP_5384 at 6136.920 kb on - strand, within PP_5384 at 6136.920 kb on - strand, within PP_5384 at 6136.920 kb on - strand, within PP_5384 at 6136.920 kb on - strand, within PP_5384 at 6137.007 kb on - strand at 6137.067 kb on + strand at 6137.068 kb on - strand at 6137.079 kb on - strand at 6137.092 kb on + strand at 6137.119 kb on + strand at 6137.119 kb on + strand at 6137.128 kb on + strand at 6137.128 kb on + strand at 6137.128 kb on + strand at 6137.129 kb on - strand at 6137.129 kb on - strand at 6137.191 kb on + strand, within PP_5733 at 6137.192 kb on - strand, within PP_5733 at 6137.192 kb on - strand, within PP_5733 at 6137.225 kb on + strand, within PP_5733 at 6137.225 kb on + strand, within PP_5733 at 6137.225 kb on + strand, within PP_5733 at 6137.226 kb on - strand, within PP_5733 at 6137.226 kb on - strand, within PP_5733 at 6137.321 kb on + strand, within PP_5733 at 6137.321 kb on + strand, within PP_5733 at 6137.393 kb on + strand, within PP_5733 at 6137.394 kb on - strand, within PP_5733 at 6137.397 kb on + strand, within PP_5733 at 6137.398 kb on - strand, within PP_5733 at 6137.398 kb on - strand, within PP_5733 at 6137.413 kb on + strand, within PP_5733 at 6137.414 kb on - strand, within PP_5733 at 6137.414 kb on - strand, within PP_5733 at 6137.414 kb on - strand, within PP_5733 at 6137.465 kb on + strand at 6137.466 kb on - strand at 6137.557 kb on - strand at 6137.595 kb on + strand at 6137.596 kb on - strand at 6137.596 kb on - strand at 6137.613 kb on + strand at 6137.807 kb on - strand, within PP_5385 at 6137.807 kb on - strand, within PP_5385 at 6137.977 kb on + strand, within PP_5385 at 6137.977 kb on + strand, within PP_5385 at 6137.978 kb on - strand, within PP_5385 at 6137.978 kb on - strand, within PP_5385 at 6137.984 kb on + strand, within PP_5385 at 6137.984 kb on + strand, within PP_5385 at 6137.984 kb on + strand, within PP_5385 at 6138.182 kb on - strand, within PP_5385 at 6138.254 kb on + strand, within PP_5385 at 6138.255 kb on - strand, within PP_5385 at 6138.255 kb on - strand, within PP_5385 at 6138.255 kb on - strand, within PP_5385 at 6138.255 kb on - strand, within PP_5385 at 6138.285 kb on + strand, within PP_5385 at 6138.377 kb on + strand, within PP_5385 at 6138.377 kb on + strand, within PP_5385 at 6138.377 kb on + strand, within PP_5385 at 6138.567 kb on - strand, within PP_5385 at 6138.576 kb on + strand, within PP_5385 at 6138.577 kb on - strand, within PP_5385 at 6138.604 kb on + strand, within PP_5385 at 6138.604 kb on + strand, within PP_5385 at 6138.675 kb on + strand at 6138.721 kb on - strand at 6138.721 kb on - strand at 6138.727 kb on + strand at 6138.748 kb on - strand at 6138.777 kb on + strand at 6138.777 kb on + strand at 6138.777 kb on + strand at 6138.777 kb on + strand at 6138.777 kb on + strand at 6138.777 kb on + strand at 6138.777 kb on + strand at 6138.778 kb on - strand at 6138.778 kb on - strand at 6138.778 kb on - strand at 6138.778 kb on - strand at 6138.778 kb on - strand at 6138.780 kb on - strand at 6138.810 kb on + strand at 6138.810 kb on + strand at 6138.841 kb on - strand at 6138.859 kb on + strand at 6138.859 kb on + strand at 6138.860 kb on - strand at 6138.860 kb on - strand at 6138.902 kb on + strand at 6138.902 kb on + strand at 6138.903 kb on - strand at 6138.925 kb on + strand at 6138.925 kb on + strand at 6138.926 kb on - strand at 6138.931 kb on + strand at 6138.932 kb on - strand at 6139.139 kb on + strand, within PP_5386 at 6139.139 kb on + strand, within PP_5386 at 6139.140 kb on - strand, within PP_5386 at 6139.140 kb on - strand, within PP_5386 at 6139.140 kb on - strand, within PP_5386 at 6139.140 kb on - strand, within PP_5386 at 6139.169 kb on + strand, within PP_5386 at 6139.169 kb on + strand, within PP_5386 at 6139.169 kb on + strand, within PP_5386 at 6139.170 kb on - strand, within PP_5386 at 6139.207 kb on + strand, within PP_5386 at 6139.207 kb on + strand, within PP_5386 at 6139.208 kb on - strand, within PP_5386 at 6139.208 kb on - strand, within PP_5386 at 6139.208 kb on - strand, within PP_5386 at 6139.208 kb on - strand, within PP_5386 at 6139.259 kb on + strand, within PP_5386 at 6139.259 kb on + strand, within PP_5386 at 6139.260 kb on - strand, within PP_5386 at 6139.260 kb on - strand, within PP_5386 at 6139.260 kb on - strand, within PP_5386 at 6139.331 kb on + strand, within PP_5386 at 6139.331 kb on + strand, within PP_5386 at 6139.332 kb on - strand, within PP_5386 at 6139.422 kb on - strand, within PP_5386 at 6139.448 kb on + strand, within PP_5386 at 6139.449 kb on - strand, within PP_5386 at 6139.509 kb on + strand at 6139.509 kb on + strand, within PP_5386 at 6139.509 kb on + strand, within PP_5386 at 6139.510 kb on - strand, within PP_5386 at 6139.510 kb on - strand, within PP_5386 at 6139.510 kb on - strand, within PP_5386 at 6139.520 kb on + strand, within PP_5386 at 6139.609 kb on + strand, within PP_5386 at 6139.647 kb on - strand, within PP_5386 at 6139.674 kb on + strand, within PP_5386 at 6139.674 kb on + strand, within PP_5386 at 6139.674 kb on + strand, within PP_5386 at 6139.675 kb on - strand, within PP_5386 at 6139.675 kb on - strand, within PP_5386 at 6139.675 kb on - strand, within PP_5386 at 6139.689 kb on + strand, within PP_5386 at 6139.689 kb on + strand, within PP_5386
Per-strain Table
Position Strand Gene LocusTag Fraction pH 7 remove 6,136,628 - PP_5384 0.69 +1.2 6,136,635 + PP_5384 0.69 -0.3 6,136,636 - PP_5384 0.69 -0.7 6,136,636 - PP_5384 0.69 +0.8 6,136,638 + PP_5384 0.69 +3.4 6,136,638 + PP_5384 0.69 -1.7 6,136,639 - PP_5384 0.69 -1.1 6,136,639 - PP_5384 0.69 +1.0 6,136,639 - PP_5384 0.69 +1.8 6,136,666 + PP_5384 0.71 +0.8 6,136,666 + PP_5384 0.71 +1.3 6,136,736 + PP_5384 0.76 +0.7 6,136,736 + PP_5384 0.76 -2.1 6,136,736 + PP_5384 0.76 -0.7 6,136,736 + PP_5384 0.76 +0.8 6,136,737 - PP_5384 0.76 -0.5 6,136,758 + PP_5384 0.78 +0.9 6,136,759 - PP_5384 0.78 +3.2 6,136,759 - PP_5384 0.78 +0.3 6,136,759 - PP_5384 0.78 +1.5 6,136,885 - PP_5384 0.87 -1.9 6,136,919 + PP_5384 0.89 +3.1 6,136,919 + PP_5384 0.89 -2.7 6,136,919 + PP_5384 0.89 -1.1 6,136,919 + PP_5384 0.89 +2.0 6,136,919 + PP_5384 0.89 -0.6 6,136,919 + PP_5384 0.89 +0.8 6,136,919 + PP_5384 0.89 +0.8 6,136,919 + PP_5384 0.89 +3.8 6,136,920 - PP_5384 0.89 -2.1 6,136,920 - PP_5384 0.89 -0.9 6,136,920 - PP_5384 0.89 +1.8 6,136,920 - PP_5384 0.89 +0.1 6,136,920 - PP_5384 0.89 -1.5 6,136,920 - PP_5384 0.89 -1.5 6,137,007 - +0.5 6,137,067 + +0.3 6,137,068 - +0.1 6,137,079 - -1.2 6,137,092 + -2.3 6,137,119 + -3.6 6,137,119 + -2.7 6,137,128 + -1.0 6,137,128 + -0.1 6,137,128 + +0.3 6,137,129 - -0.2 6,137,129 - -1.6 6,137,191 + PP_5733 0.24 -1.4 6,137,192 - PP_5733 0.25 +0.8 6,137,192 - PP_5733 0.25 -1.1 6,137,225 + PP_5733 0.34 -1.8 6,137,225 + PP_5733 0.34 -0.4 6,137,225 + PP_5733 0.34 -1.8 6,137,226 - PP_5733 0.34 +2.8 6,137,226 - PP_5733 0.34 -0.4 6,137,321 + PP_5733 0.61 -1.6 6,137,321 + PP_5733 0.61 -0.5 6,137,393 + PP_5733 0.82 +0.5 6,137,394 - PP_5733 0.82 -0.5 6,137,397 + PP_5733 0.83 +0.2 6,137,398 - PP_5733 0.83 -1.4 6,137,398 - PP_5733 0.83 +1.8 6,137,413 + PP_5733 0.87 -0.8 6,137,414 - PP_5733 0.88 +0.2 6,137,414 - PP_5733 0.88 -0.2 6,137,414 - PP_5733 0.88 -1.7 6,137,465 + -2.5 6,137,466 - -3.7 6,137,557 - -2.2 6,137,595 + -0.2 6,137,596 - -1.7 6,137,596 - +0.2 6,137,613 + -0.8 6,137,807 - PP_5385 0.21 -0.2 6,137,807 - PP_5385 0.21 +0.8 6,137,977 + PP_5385 0.34 +0.6 6,137,977 + PP_5385 0.34 +0.5 6,137,978 - PP_5385 0.34 +0.3 6,137,978 - PP_5385 0.34 +0.8 6,137,984 + PP_5385 0.35 -0.7 6,137,984 + PP_5385 0.35 -0.5 6,137,984 + PP_5385 0.35 +3.4 6,138,182 - PP_5385 0.51 +1.3 6,138,254 + PP_5385 0.56 -2.0 6,138,255 - PP_5385 0.57 +1.2 6,138,255 - PP_5385 0.57 +0.8 6,138,255 - PP_5385 0.57 +0.8 6,138,255 - PP_5385 0.57 -1.1 6,138,285 + PP_5385 0.59 -0.8 6,138,377 + PP_5385 0.66 -1.9 6,138,377 + PP_5385 0.66 +1.5 6,138,377 + PP_5385 0.66 -0.2 6,138,567 - PP_5385 0.81 +0.0 6,138,576 + PP_5385 0.82 +1.8 6,138,577 - PP_5385 0.82 +0.8 6,138,604 + PP_5385 0.84 -1.6 6,138,604 + PP_5385 0.84 +4.6 6,138,675 + +0.8 6,138,721 - +1.5 6,138,721 - -1.6 6,138,727 + -1.4 6,138,748 - -0.9 6,138,777 + +1.1 6,138,777 + +0.8 6,138,777 + +0.8 6,138,777 + -1.6 6,138,777 + +0.8 6,138,777 + -1.2 6,138,777 + +0.1 6,138,778 - -1.8 6,138,778 - +1.8 6,138,778 - +0.8 6,138,778 - +3.8 6,138,778 - +0.8 6,138,780 - -1.8 6,138,810 + -2.7 6,138,810 + +0.6 6,138,841 - -3.2 6,138,859 + -3.2 6,138,859 + -0.4 6,138,860 - +0.5 6,138,860 - -1.9 6,138,902 + -0.9 6,138,902 + -0.5 6,138,903 - +0.3 6,138,925 + -1.7 6,138,925 + -1.4 6,138,926 - -3.1 6,138,931 + +0.9 6,138,932 - +1.7 6,139,139 + PP_5386 0.23 +0.9 6,139,139 + PP_5386 0.23 +3.1 6,139,140 - PP_5386 0.23 -1.9 6,139,140 - PP_5386 0.23 -1.8 6,139,140 - PP_5386 0.23 +0.2 6,139,140 - PP_5386 0.23 +0.8 6,139,169 + PP_5386 0.25 -0.7 6,139,169 + PP_5386 0.25 +0.3 6,139,169 + PP_5386 0.25 +0.7 6,139,170 - PP_5386 0.25 +0.7 6,139,207 + PP_5386 0.28 -1.5 6,139,207 + PP_5386 0.28 +0.3 6,139,208 - PP_5386 0.28 +0.5 6,139,208 - PP_5386 0.28 -1.3 6,139,208 - PP_5386 0.28 -0.3 6,139,208 - PP_5386 0.28 -1.8 6,139,259 + PP_5386 0.31 +0.1 6,139,259 + PP_5386 0.31 -0.2 6,139,260 - PP_5386 0.32 -0.8 6,139,260 - PP_5386 0.32 +0.4 6,139,260 - PP_5386 0.32 -0.5 6,139,331 + PP_5386 0.36 +1.2 6,139,331 + PP_5386 0.36 -3.0 6,139,332 - PP_5386 0.36 +0.5 6,139,422 - PP_5386 0.42 +2.5 6,139,448 + PP_5386 0.44 -0.3 6,139,449 - PP_5386 0.44 -0.3 6,139,509 + +0.8 6,139,509 + PP_5386 0.48 +1.5 6,139,509 + PP_5386 0.48 +1.8 6,139,510 - PP_5386 0.48 +0.7 6,139,510 - PP_5386 0.48 +0.0 6,139,510 - PP_5386 0.48 -0.1 6,139,520 + PP_5386 0.49 +3.1 6,139,609 + PP_5386 0.55 -0.5 6,139,647 - PP_5386 0.58 -0.1 6,139,674 + PP_5386 0.60 -0.2 6,139,674 + PP_5386 0.60 -2.7 6,139,674 + PP_5386 0.60 -0.4 6,139,675 - PP_5386 0.60 -4.1 6,139,675 - PP_5386 0.60 -0.4 6,139,675 - PP_5386 0.60 -1.1 6,139,689 + PP_5386 0.61 -0.2 6,139,689 + PP_5386 0.61 +0.7
Or see this region's nucleotide sequence