Strain Fitness in Pseudomonas putida KT2440 around PP_5099

Experiment: pH 7

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_5097 and PP_5098 overlap by 11 nucleotidesPP_5098 and PP_5099 are separated by 22 nucleotidesPP_5099 and PP_5100 overlap by 4 nucleotidesPP_5100 and PP_5101 overlap by 4 nucleotides PP_5097: PP_5097 - homoserine O-acetyltransferase, at 5,820,251 to 5,821,390 _5097 PP_5098: PP_5098 - methionine biosynthesis protein MetW, at 5,821,380 to 5,822,018 _5098 PP_5099: PP_5099 - conserved protein of unknown function, at 5,822,041 to 5,822,475 _5099 PP_5100: PP_5100 - dITP/XTP pyrophosphatase, at 5,822,472 to 5,823,068 _5100 PP_5101: PP_5101 - coproporphyrinogen/heterocyclic compound oxidase (aerobic), at 5,823,065 to 5,824,240 _5101 Position (kb) 5822 5823Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 5821.049 kb on + strand, within PP_5097at 5821.049 kb on + strand, within PP_5097at 5821.049 kb on + strand, within PP_5097at 5821.100 kb on + strand, within PP_5097at 5821.100 kb on + strand, within PP_5097at 5821.101 kb on - strand, within PP_5097at 5821.127 kb on + strand, within PP_5097at 5821.127 kb on + strand, within PP_5097at 5821.193 kb on + strand, within PP_5097at 5821.194 kb on - strand, within PP_5097at 5821.290 kb on - strandat 5821.346 kb on + strandat 5821.347 kb on - strandat 5821.347 kb on - strandat 5821.347 kb on - strandat 5821.367 kb on + strandat 5821.367 kb on + strandat 5821.367 kb on + strandat 5821.367 kb on + strandat 5821.368 kb on - strandat 5821.368 kb on - strandat 5821.451 kb on - strand, within PP_5098at 5821.545 kb on - strand, within PP_5098at 5821.545 kb on - strand, within PP_5098at 5821.669 kb on - strand, within PP_5098at 5821.758 kb on + strand, within PP_5098at 5821.803 kb on + strand, within PP_5098at 5821.803 kb on + strand, within PP_5098at 5821.803 kb on + strand, within PP_5098at 5821.803 kb on + strand, within PP_5098at 5821.803 kb on + strand, within PP_5098at 5821.804 kb on - strand, within PP_5098at 5821.804 kb on - strand, within PP_5098at 5821.805 kb on + strand, within PP_5098at 5821.805 kb on + strand, within PP_5098at 5821.805 kb on + strand, within PP_5098at 5821.806 kb on - strand, within PP_5098at 5821.812 kb on + strand, within PP_5098at 5821.813 kb on - strand, within PP_5098at 5821.813 kb on - strand, within PP_5098at 5821.813 kb on - strand, within PP_5098at 5821.946 kb on + strand, within PP_5098at 5821.947 kb on - strand, within PP_5098at 5821.955 kb on - strandat 5821.955 kb on - strandat 5821.955 kb on - strandat 5821.971 kb on + strandat 5821.972 kb on - strandat 5822.130 kb on - strand, within PP_5099at 5822.152 kb on + strand, within PP_5099at 5822.356 kb on + strand, within PP_5099at 5822.359 kb on + strand, within PP_5099at 5822.359 kb on + strand, within PP_5099at 5822.359 kb on + strand, within PP_5099at 5822.360 kb on - strand, within PP_5099at 5822.360 kb on - strand, within PP_5099at 5822.360 kb on - strand, within PP_5099at 5822.360 kb on - strand, within PP_5099at 5822.360 kb on - strand, within PP_5099at 5822.360 kb on - strand, within PP_5099at 5822.494 kb on + strandat 5822.728 kb on - strand, within PP_5100at 5822.728 kb on - strand, within PP_5100at 5822.740 kb on - strand, within PP_5100at 5822.989 kb on + strand, within PP_5100at 5822.990 kb on - strand, within PP_5100at 5823.128 kb on + strandat 5823.129 kb on - strandat 5823.129 kb on - strandat 5823.151 kb on - strandat 5823.215 kb on + strand, within PP_5101at 5823.261 kb on + strand, within PP_5101at 5823.261 kb on + strand, within PP_5101at 5823.340 kb on - strand, within PP_5101at 5823.351 kb on + strand, within PP_5101at 5823.351 kb on + strand, within PP_5101at 5823.351 kb on + strand, within PP_5101at 5823.351 kb on + strand, within PP_5101at 5823.352 kb on - strand, within PP_5101at 5823.352 kb on - strand, within PP_5101at 5823.361 kb on + strand, within PP_5101at 5823.361 kb on + strand, within PP_5101at 5823.362 kb on - strand, within PP_5101at 5823.362 kb on - strand, within PP_5101

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction pH 7
remove
5,821,049 + PP_5097 0.70 -3.2
5,821,049 + PP_5097 0.70 -3.5
5,821,049 + PP_5097 0.70 -3.5
5,821,100 + PP_5097 0.74 -2.7
5,821,100 + PP_5097 0.74 +0.8
5,821,101 - PP_5097 0.75 -2.5
5,821,127 + PP_5097 0.77 -4.5
5,821,127 + PP_5097 0.77 -3.6
5,821,193 + PP_5097 0.83 -0.6
5,821,194 - PP_5097 0.83 -3.3
5,821,290 - -0.2
5,821,346 + -2.5
5,821,347 - -0.2
5,821,347 - -3.0
5,821,347 - -3.0
5,821,367 + -3.0
5,821,367 + -1.5
5,821,367 + -4.7
5,821,367 + -4.2
5,821,368 - -3.0
5,821,368 - -1.5
5,821,451 - PP_5098 0.11 -3.0
5,821,545 - PP_5098 0.26 -3.1
5,821,545 - PP_5098 0.26 -2.2
5,821,669 - PP_5098 0.45 +0.8
5,821,758 + PP_5098 0.59 -0.2
5,821,803 + PP_5098 0.66 -2.5
5,821,803 + PP_5098 0.66 -2.0
5,821,803 + PP_5098 0.66 -3.0
5,821,803 + PP_5098 0.66 +1.4
5,821,803 + PP_5098 0.66 -4.6
5,821,804 - PP_5098 0.66 -3.3
5,821,804 - PP_5098 0.66 +0.8
5,821,805 + PP_5098 0.67 -3.2
5,821,805 + PP_5098 0.67 -5.0
5,821,805 + PP_5098 0.67 -4.2
5,821,806 - PP_5098 0.67 -4.0
5,821,812 + PP_5098 0.68 -4.0
5,821,813 - PP_5098 0.68 -2.4
5,821,813 - PP_5098 0.68 -3.3
5,821,813 - PP_5098 0.68 -3.2
5,821,946 + PP_5098 0.89 -4.2
5,821,947 - PP_5098 0.89 -2.2
5,821,955 - +0.8
5,821,955 - -2.5
5,821,955 - +0.8
5,821,971 + -1.5
5,821,972 - -1.5
5,822,130 - PP_5099 0.20 -1.7
5,822,152 + PP_5099 0.26 -2.8
5,822,356 + PP_5099 0.72 -1.5
5,822,359 + PP_5099 0.73 -1.3
5,822,359 + PP_5099 0.73 +0.8
5,822,359 + PP_5099 0.73 -1.9
5,822,360 - PP_5099 0.73 -1.7
5,822,360 - PP_5099 0.73 -2.2
5,822,360 - PP_5099 0.73 -1.0
5,822,360 - PP_5099 0.73 -1.0
5,822,360 - PP_5099 0.73 +0.6
5,822,360 - PP_5099 0.73 +0.2
5,822,494 + +0.8
5,822,728 - PP_5100 0.43 +2.8
5,822,728 - PP_5100 0.43 +3.9
5,822,740 - PP_5100 0.45 -0.2
5,822,989 + PP_5100 0.87 -0.1
5,822,990 - PP_5100 0.87 -2.0
5,823,128 + -0.4
5,823,129 - +0.0
5,823,129 - +2.4
5,823,151 - +2.2
5,823,215 + PP_5101 0.13 +0.8
5,823,261 + PP_5101 0.17 +1.8
5,823,261 + PP_5101 0.17 +0.8
5,823,340 - PP_5101 0.23 +0.8
5,823,351 + PP_5101 0.24 +3.1
5,823,351 + PP_5101 0.24 +2.4
5,823,351 + PP_5101 0.24 -3.5
5,823,351 + PP_5101 0.24 +0.8
5,823,352 - PP_5101 0.24 +0.8
5,823,352 - PP_5101 0.24 +1.8
5,823,361 + PP_5101 0.25 +0.8
5,823,361 + PP_5101 0.25 +0.3
5,823,362 - PP_5101 0.25 -3.3
5,823,362 - PP_5101 0.25 +1.8

Or see this region's nucleotide sequence