Strain Fitness in Pseudomonas putida KT2440 around PP_4973

Experiment: pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 7
5,664,039	-		PP_4971	0.69	+0.2
5,664,067	+		PP_4971	0.71	-0.4
5,664,067	+		PP_4971	0.71	-2.1
5,664,067	+		PP_4971	0.71	+0.8
5,664,068	-		PP_4971	0.71	+0.9
5,664,068	-		PP_4971	0.71	-0.5
5,664,068	-		PP_4971	0.71	+0.1
5,664,068	-		PP_4971	0.71	-0.9
5,664,072	-		PP_4971	0.72	+0.2
5,664,125	+		PP_4971	0.76	-2.8
5,664,125	+		PP_4971	0.76	+2.0
5,664,126	-		PP_4971	0.76	-1.7
5,664,390	-				+1.3
5,664,399	-				+0.5
5,664,399	-				-0.6
5,664,399	-				-0.2
5,664,541	+		PP_4972	0.22	-1.6
5,664,541	+		PP_4972	0.22	-1.0
5,664,553	+		PP_4972	0.25	+0.8
5,664,553	+		PP_4972	0.25	-1.4
5,664,554	-		PP_4972	0.25	+0.3
5,664,554	-		PP_4972	0.25	-0.2
5,664,572	+		PP_4972	0.30	-1.5
5,664,573	-		PP_4972	0.30	-1.0
5,664,573	-		PP_4972	0.30	-1.5
5,664,574	+		PP_4972	0.30	+0.7
5,664,574	+		PP_4972	0.30	-0.8
5,664,574	+		PP_4972	0.30	+0.5
5,664,574	+		PP_4972	0.30	+0.5
5,664,574	+		PP_4972	0.30	+0.8
5,664,574	+		PP_4972	0.30	+0.8
5,664,574	+		PP_4972	0.30	+0.8
5,664,574	+		PP_4972	0.30	+3.1
5,664,574	+		PP_4972	0.30	-0.5
5,664,574	+		PP_4972	0.30	-1.4
5,664,574	+		PP_4972	0.30	+1.4
5,664,575	-		PP_4972	0.31	-2.9
5,664,575	-		PP_4972	0.31	-0.6
5,664,575	-		PP_4972	0.31	+0.2
5,664,575	-		PP_4972	0.31	-1.3
5,664,575	-		PP_4972	0.31	+0.6
5,664,575	-		PP_4972	0.31	+1.4
5,664,575	-		PP_4972	0.31	+2.0
5,664,575	-		PP_4972	0.31	-1.5
5,664,575	-		PP_4972	0.31	-1.9
5,664,575	-		PP_4972	0.31	-0.8
5,664,575	-		PP_4972	0.31	-0.3
5,664,668	-		PP_4972	0.55	-0.3
5,664,668	-		PP_4972	0.55	+0.3
5,664,717	-		PP_4972	0.67	+0.7
5,664,883	+				-0.2
5,664,884	-				-2.2
5,664,916	+				+0.3
5,664,916	+				+3.0
5,664,917	-				+1.8
5,665,049	+		PP_4973	0.21	+2.7
5,665,050	-		PP_4973	0.21	+0.1
5,665,111	+		PP_4973	0.29	-0.5
5,665,111	+		PP_4973	0.29	-0.8
5,665,111	+		PP_4973	0.29	-1.0
5,665,112	-		PP_4973	0.29	+1.5
5,665,133	-		PP_4973	0.31	+0.4
5,665,133	-		PP_4973	0.31	-0.7
5,665,187	+		PP_4973	0.38	+2.1
5,665,187	+		PP_4973	0.38	+0.8
5,665,238	+		PP_4973	0.44	-0.1
5,665,238	+		PP_4973	0.44	+0.9
5,665,239	-		PP_4973	0.44	+2.4
5,665,445	+		PP_4973	0.69	+0.8
5,665,445	+		PP_4973	0.69	-1.4
5,665,446	-		PP_4973	0.69	+2.9
5,665,446	-		PP_4973	0.69	+1.4
5,665,490	+		PP_4973	0.74	-3.3
5,665,491	-		PP_4973	0.74	+0.8
5,665,496	+		PP_4973	0.75	-1.8
5,665,497	-		PP_4973	0.75	+1.5
5,665,497	-		PP_4973	0.75	+1.0
5,665,497	-		PP_4973	0.75	-3.3
5,665,522	+		PP_4973	0.78	-3.3
5,665,650	+				+1.0
5,665,650	+				+2.8
5,665,740	+				+0.1
5,665,740	+				-0.6
5,665,740	+				-0.9
5,665,740	+				-1.8
5,665,741	-				-2.0
5,665,741	-				+3.1
5,665,741	-				-1.2
5,665,742	+				+0.8
5,665,742	+				-0.6
5,665,742	+				+0.5
5,665,742	+				-0.1
5,665,742	+				-2.8
5,665,743	-				-2.7
5,665,744	+				+2.4
5,665,744	+				+0.3
5,665,744	+				-0.8
5,665,744	+				-2.0
5,665,745	-				+2.4
5,665,801	+				-0.0
5,665,802	-				-0.2
5,665,802	-				+0.8
5,665,802	-				-0.2
5,665,850	+				-3.5
5,665,885	+				-1.6
5,665,974	+				-2.9
5,665,975	-				+0.4
5,665,975	-				+0.2
5,665,975	-				+2.8
5,665,976	+				-1.4
5,665,977	-				-0.7
5,665,977	-				-0.2
5,665,997	+				+0.8
5,665,997	+				+0.8
5,665,998	-				-3.7
5,666,036	-				-0.1
5,666,045	-				+0.8
5,666,045	-				+1.7
5,666,108	+				+0.2
5,666,108	+				-0.8
5,666,266	+		PP_4974	0.23	+0.8
5,666,292	+		PP_4974	0.25	-0.1
5,666,292	+		PP_4974	0.25	+0.8
5,666,293	-		PP_4974	0.25	-3.6
5,666,330	-		PP_4974	0.28	-0.0
5,666,380	+		PP_4974	0.32	-0.1
5,666,381	-		PP_4974	0.32	+1.3
5,666,446	-		PP_4974	0.37	-1.9
5,666,446	-		PP_4974	0.37	+0.8
5,666,446	-		PP_4974	0.37	-0.2
5,666,470	-		PP_4974	0.39	+0.8
5,666,523	-		PP_4974	0.43	+0.8
5,666,647	+		PP_4974	0.53	+0.6