Strain Fitness in Pseudomonas putida KT2440 around PP_4846

Experiment: pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 7
5,513,208	+				+0.3
5,513,209	-				-1.4
5,513,209	-				+1.7
5,513,277	+				+2.1
5,513,277	+				-0.4
5,513,278	-				-3.1
5,513,278	-				-1.4
5,513,288	+				-0.6
5,513,288	+				+0.0
5,513,289	-				+0.8
5,513,314	-				-0.0
5,513,325	+				-0.0
5,513,403	+				+0.4
5,513,403	+				-2.0
5,513,403	+				+1.4
5,513,404	-				-1.2
5,513,406	+				-0.6
5,513,406	+				+1.6
5,513,407	-				+0.6
5,513,407	-				-1.8
5,513,407	-				+1.3
5,513,613	+		PP_4845	0.34	-0.2
5,513,613	+		PP_4845	0.34	-2.7
5,513,613	+		PP_4845	0.34	+0.6
5,513,725	-		PP_4845	0.50	-2.4
5,513,725	-		PP_4845	0.50	+1.8
5,513,955	+		PP_4845	0.83	-3.5
5,513,956	-		PP_4845	0.83	-1.0
5,514,052	+				-0.5
5,514,052	+				+0.4
5,514,052	+				+1.5
5,514,053	-				+0.9
5,514,053	-				+0.8
5,514,064	+				-0.2
5,514,072	+				+0.9
5,514,073	-				+0.5
5,514,152	+				+1.8
5,514,163	+		PP_4846	0.11	+2.5
5,514,164	-		PP_4846	0.11	-3.2
5,514,164	-		PP_4846	0.11	+0.2
5,514,164	-		PP_4846	0.11	+0.2
5,514,164	-		PP_4846	0.11	+2.4
5,514,304	+		PP_4846	0.38	+0.8
5,514,367	+		PP_4846	0.51	+1.9
5,514,367	+		PP_4846	0.51	+1.8
5,514,368	-		PP_4846	0.51	-3.3
5,514,552	+		PP_4846	0.86	-1.4
5,514,759	+				+0.8
5,514,759	+				+1.1
5,514,760	-				-1.0
5,515,027	+		PP_4847	0.88	+0.8
5,515,028	-		PP_4847	0.88	+1.4
5,515,028	-		PP_4847	0.88	-0.7
5,515,071	+				-2.7
5,515,071	+				+0.8
5,515,071	+				-2.4
5,515,072	-				-1.0
5,515,072	-				+0.8
5,515,179	-		PP_4848	0.12	-1.0