Strain Fitness in Pseudomonas putida KT2440 around PP_4644

Experiment: pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 7
5,268,082	-		PP_4643	0.44	-1.3
5,268,180	-		PP_4643	0.50	+0.1
5,268,180	-		PP_4643	0.50	+0.4
5,268,390	+		PP_4643	0.64	+0.8
5,268,390	+		PP_4643	0.64	+0.5
5,268,391	-		PP_4643	0.64	-1.0
5,268,424	+		PP_4643	0.66	+1.3
5,268,425	-		PP_4643	0.67	+0.3
5,268,425	-		PP_4643	0.67	+0.6
5,268,425	-		PP_4643	0.67	+1.7
5,268,494	+		PP_4643	0.71	+1.8
5,268,552	+		PP_4643	0.75	-1.5
5,268,553	-		PP_4643	0.75	+4.2
5,268,553	-		PP_4643	0.75	-2.0
5,268,553	-		PP_4643	0.75	-1.0
5,268,630	+		PP_4643	0.80	+5.0
5,268,630	+		PP_4643	0.80	+1.3
5,268,630	+		PP_4643	0.80	-1.4
5,268,630	+		PP_4643	0.80	-0.3
5,268,630	+		PP_4643	0.80	+1.0
5,268,631	-		PP_4643	0.80	+1.0
5,268,631	-		PP_4643	0.80	-2.1
5,268,631	-		PP_4643	0.80	+0.8
5,268,631	-		PP_4643	0.80	-1.0
5,268,790	-				+0.8
5,268,823	-				+0.8
5,269,130	+		PP_4644	0.12	-1.2
5,269,478	-		PP_4644	0.37	-0.9
5,269,508	+		PP_4644	0.39	+0.2
5,269,509	-		PP_4644	0.39	+2.7
5,269,623	+		PP_4644	0.48	+1.6
5,269,624	-		PP_4644	0.48	-0.2
5,269,728	+		PP_4644	0.55	-2.2
5,269,728	+		PP_4644	0.55	+0.8
5,269,728	+		PP_4644	0.55	-3.3
5,269,728	+		PP_4644	0.55	-1.0
5,269,968	+		PP_4644	0.73	+1.8
5,269,968	+		PP_4644	0.73	+3.4
5,269,968	+		PP_4644	0.73	+0.6
5,269,968	+		PP_4644	0.73	+0.8
5,269,968	+		PP_4644	0.73	+0.1
5,269,968	+		PP_4644	0.73	+0.8
5,269,969	-		PP_4644	0.73	-0.6
5,270,316	+				+0.8
5,270,316	+				+1.2
5,270,316	+				+0.8
5,270,317	-				-0.2
5,270,317	-				-1.3
5,270,317	-				+0.1
5,270,317	-				-3.4
5,270,317	-				-0.1
5,270,370	+				+3.4
5,270,370	+				+0.8
5,270,370	+				+0.8
5,270,371	-				+2.4
5,270,371	-				-0.6
5,270,424	+				+1.8
5,270,465	+				-0.8
5,270,466	-				-0.1
5,270,466	-				-0.1
5,270,474	+				-0.0
5,270,475	-				+0.0
5,270,475	-				+2.1
5,270,475	-				+0.3
5,270,475	-				-1.7
5,270,475	-				+0.8
5,270,485	-				-1.1
5,270,485	-				-0.5
5,270,501	-				+0.8
5,270,580	+		PP_4645	0.15	-0.0
5,270,717	+		PP_4645	0.48	-0.1
5,270,717	+		PP_4645	0.48	+0.2
5,270,718	-		PP_4645	0.48	-1.0
5,270,718	-		PP_4645	0.48	+5.9
5,270,737	+		PP_4645	0.53	-1.0
5,270,760	-		PP_4645	0.58	+0.0
5,270,760	-		PP_4645	0.58	-0.1
5,271,031	-				+0.3
5,271,059	+				+0.2
5,271,060	-				+0.6