Strain Fitness in Pseudomonas putida KT2440 around PP_3968

Experiment: pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 7
4,476,434	+				+1.9
4,476,434	+				+1.6
4,476,434	+				-1.2
4,476,435	-				+1.1
4,476,695	-		PP_3967	0.61	+0.6
4,476,720	-		PP_3967	0.66	+0.1
4,476,720	-		PP_3967	0.66	-0.9
4,476,798	+		PP_3967	0.84	-1.9
4,476,799	-		PP_3967	0.84	-1.9
4,476,833	+				-0.9
4,476,834	-				+1.7
4,476,834	-				+1.5
4,476,834	-				+1.9
4,476,846	+				-1.2
4,476,927	+				+2.3
4,476,928	-				-0.0
4,476,928	-				+1.5
4,476,928	-				-2.2
4,476,969	+				+0.9
4,476,970	-				-1.9
4,476,982	-				+0.8
4,477,016	-		PP_3968	0.13	-1.1
4,477,016	-		PP_3968	0.13	-0.2
4,477,025	-		PP_3968	0.14	-0.1
4,477,230	+		PP_3968	0.32	-2.4
4,477,248	-		PP_3968	0.34	+0.9
4,477,338	-		PP_3968	0.42	+0.2
4,477,385	+		PP_3968	0.46	-0.7
4,477,385	+		PP_3968	0.46	-0.3
4,477,386	-		PP_3968	0.46	-0.2
4,477,386	-		PP_3968	0.46	-0.7
4,477,409	+		PP_3968	0.48	-0.4
4,477,468	-		PP_3968	0.53	+0.6
4,477,485	+		PP_3968	0.55	-0.1
4,477,485	+		PP_3968	0.55	+0.9
4,477,486	-		PP_3968	0.55	+1.5
4,477,530	+		PP_3968	0.59	+1.5
4,477,564	+		PP_3968	0.62	+0.9
4,477,565	-		PP_3968	0.62	-2.1
4,477,671	+		PP_3968	0.71	-1.4
4,477,671	+		PP_3968	0.71	-0.1
4,477,672	-		PP_3968	0.71	+1.1
4,477,731	+		PP_3968	0.77	+2.5
4,477,742	+		PP_3968	0.78	+0.5
4,477,780	-		PP_3968	0.81	+1.8
4,477,780	-		PP_3968	0.81	+0.8
4,477,832	+		PP_3968	0.86	-1.1
4,477,833	-		PP_3968	0.86	-0.4
4,477,833	-		PP_3968	0.86	+2.1
4,477,839	-		PP_3968	0.86	+0.3
4,477,839	-		PP_3968	0.86	+0.7
4,477,905	+				-0.1
4,477,906	-				-2.2
4,477,962	-				-0.4
4,477,982	-				-1.0
4,477,982	-				-2.4
4,478,015	+				+0.9
4,478,016	-				+0.5
4,478,016	-				-0.2
4,478,016	-				-0.7
4,478,100	+				+0.3
4,478,100	+				+0.6
4,478,100	+				+0.9
4,478,100	+				-0.1
4,478,100	+				-1.4
4,478,101	-				+0.8
4,478,101	-				-0.1
4,478,101	-				+0.1
4,478,101	-				+0.0
4,478,102	+				+0.9
4,478,102	+				-0.1
4,478,103	-				+0.1
4,478,116	-				+0.3
4,478,116	-				+0.1
4,478,122	-				-1.7
4,478,134	+				-4.3
4,478,135	-				-1.9
4,478,135	-				-2.8
4,478,135	-				-0.5
4,478,138	+				+0.8
4,478,139	-				+0.6
4,478,139	-				+0.6
4,478,139	-				-1.7
4,478,158	+				-1.1
4,478,158	+				+2.0
4,478,158	+				-2.2
4,478,161	+				-0.1
4,478,161	+				+0.0
4,478,161	+				-0.6
4,478,161	+				-0.5
4,478,161	+				+0.3
4,478,162	-				+0.9
4,478,287	+		PP_3969	0.41	+2.5
4,478,294	+		PP_3969	0.43	-0.5
4,478,294	+		PP_3969	0.43	+3.9
4,478,295	-		PP_3969	0.43	+2.5
4,478,302	+		PP_3969	0.45	+1.9
4,478,302	+		PP_3969	0.45	+0.9
4,478,302	+		PP_3969	0.45	-1.5
4,478,302	+		PP_3969	0.45	-0.9
4,478,302	+		PP_3969	0.45	-0.1
4,478,303	-		PP_3969	0.45	-0.7
4,478,303	-		PP_3969	0.45	+0.7
4,478,303	-		PP_3969	0.45	-0.2
4,478,335	+		PP_3969	0.54	+0.7
4,478,416	+		PP_3969	0.76	+0.9
4,478,438	+		PP_3969	0.82	+0.9
4,478,488	+				+0.9
4,478,536	+				+1.2
4,478,541	+				+1.9
4,478,541	+				-3.5
4,478,619	+				-0.8
4,478,649	+				-3.4
4,478,649	+				-3.5
4,478,650	-				+1.5
4,478,650	-				+1.2
4,478,665	+				-0.8
4,478,665	+				-0.2
4,478,666	-				+1.1
4,478,676	+				+1.6
4,478,676	+				+1.1
4,478,738	+				+0.9
4,478,738	+				-3.2
4,478,739	-				-0.3
4,478,739	-				+0.5
4,478,974	-		PP_3970	0.27	-0.7