Strain Fitness in Pseudomonas putida KT2440 around PP_3569

Experiment: pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 7
4,046,523	+		PP_3567	0.78	+0.3
4,046,523	+		PP_3567	0.78	-1.1
4,046,524	-		PP_3567	0.78	-0.4
4,046,643	-				+0.0
4,046,803	+				+2.0
4,046,833	+				+4.1
4,046,833	+				+0.5
4,046,833	+				-2.6
4,046,834	-				-3.9
4,046,834	-				+1.1
4,047,158	+				+0.5
4,047,158	+				-0.4
4,047,158	+				+2.0
4,047,158	+				-0.3
4,047,158	+				-0.7
4,047,158	+				+0.8
4,047,159	-				-2.4
4,047,159	-				+0.1
4,047,249	-				+1.4
4,047,249	-				+0.4
4,047,249	-				+1.1
4,047,266	-				-2.7
4,047,285	+				-0.0
4,047,318	+				-1.0
4,047,318	+				+1.0
4,047,318	+				-2.2
4,047,319	-				-0.5
4,047,319	-				+1.4
4,047,319	-				+1.3
4,047,322	+				+1.7
4,047,322	+				+2.0
4,047,324	+				-1.6
4,047,344	+				+1.0
4,047,658	-				+3.0
4,047,677	+				+2.2
4,047,678	-				-0.7
4,047,778	-		PP_3569	0.14	-1.4
4,047,853	+		PP_3569	0.17	-2.4
4,048,057	-		PP_3569	0.25	+1.4
4,048,255	-		PP_3569	0.33	+1.2
4,048,255	-		PP_3569	0.33	-0.6
4,048,479	+		PP_3569	0.43	+1.0
4,048,480	-		PP_3569	0.43	-1.0
4,048,480	-		PP_3569	0.43	-0.0
4,048,482	+				-0.0
4,048,482	+		PP_3569	0.43	+0.8
4,048,482	+		PP_3569	0.43	+0.5
4,048,483	-		PP_3569	0.43	-0.7
4,048,518	-		PP_3569	0.44	+0.6
4,048,522	+		PP_3569	0.44	+1.5
4,048,523	-		PP_3569	0.44	+1.0
4,048,672	-		PP_3569	0.51	+3.3
4,048,672	-		PP_3569	0.51	+1.0
4,048,711	-		PP_3569	0.52	-2.6
4,048,711	-		PP_3569	0.52	-1.0
4,048,767	+		PP_3569	0.54	+1.3
4,048,767	+		PP_3569	0.54	-0.9
4,048,767	+		PP_3569	0.54	+4.3
4,048,768	-		PP_3569	0.55	-0.3
4,048,768	-		PP_3569	0.55	+1.4
4,048,800	+		PP_3569	0.56	-0.4
4,048,800	+		PP_3569	0.56	+3.0
4,048,800	+		PP_3569	0.56	+0.2
4,048,801	-		PP_3569	0.56	+1.2
4,048,980	+		PP_3569	0.63	+0.0
4,048,981	-		PP_3569	0.63	+4.4
4,049,151	+		PP_3569	0.70	+0.5
4,049,151	+		PP_3569	0.70	+4.7
4,049,152	-		PP_3569	0.70	+1.2
4,049,164	+		PP_3569	0.71	+1.8
4,049,165	-		PP_3569	0.71	+0.5
4,049,165	-		PP_3569	0.71	-0.5
4,049,206	-		PP_3569	0.73	-0.3
4,049,206	-		PP_3569	0.73	-0.2
4,049,206	-		PP_3569	0.73	-3.2
4,049,280	-		PP_3569	0.76	+1.2
4,049,291	-		PP_3569	0.76	+2.7
4,049,790	+				-1.9
4,049,790	+				+4.3
4,049,790	+				-0.0
4,049,842	-				+0.4
4,049,842	-				-0.0
4,049,842	-				-0.2
4,049,903	+				-0.4
4,049,903	+				-2.0
4,049,966	+				-3.6
4,050,128	-		PP_3570	0.13	-1.0
4,050,145	+		PP_3570	0.14	-0.3
4,050,347	-		PP_3570	0.30	-0.1
4,050,370	+		PP_3570	0.32	+0.3
4,050,371	-		PP_3570	0.32	+0.3
4,050,532	+		PP_3570	0.44	-1.9
4,050,565	+		PP_3570	0.47	-1.0
4,050,565	+		PP_3570	0.47	-1.0
4,050,689	+		PP_3570	0.57	-0.7
4,050,698	+		PP_3570	0.58	-1.2
4,050,699	-		PP_3570	0.58	+0.9
4,050,701	-		PP_3570	0.58	+1.0
4,050,701	-		PP_3570	0.58	+4.3
4,050,701	-		PP_3570	0.58	-0.0
4,050,701	-		PP_3570	0.58	-1.9
4,050,701	-		PP_3570	0.58	+2.5
4,050,701	-		PP_3570	0.58	+1.3
4,050,731	-		PP_3570	0.60	+1.3
4,050,731	-		PP_3570	0.60	-0.9
4,050,742	+		PP_3570	0.61	+2.3
4,050,742	+		PP_3570	0.61	-0.7
4,050,743	-		PP_3570	0.61	-1.1
4,050,743	-		PP_3570	0.61	+0.7
4,050,745	+		PP_3570	0.61	-3.3
4,050,746	-		PP_3570	0.61	+0.9
4,050,746	-		PP_3570	0.61	-0.1
4,050,746	-		PP_3570	0.61	+1.0
4,050,746	-		PP_3570	0.61	+0.5
4,050,748	+		PP_3570	0.61	-1.9
4,050,748	+		PP_3570	0.61	-0.8
4,050,749	-		PP_3570	0.62	+0.1
4,050,749	-		PP_3570	0.62	-0.6
4,050,811	+		PP_3570	0.66	-0.4
4,050,811	+		PP_3570	0.66	-0.6
4,050,812	-		PP_3570	0.67	-1.0
4,050,812	-		PP_3570	0.67	+1.0
4,050,812	-		PP_3570	0.67	-0.1