Strain Fitness in Pseudomonas putida KT2440 around PP_3364

Experiment: pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 7
3,804,452	+		PP_3362	0.89	-1.4
3,804,452	+		PP_3362	0.89	+0.3
3,804,452	+		PP_3362	0.89	+1.4
3,804,453	-		PP_3362	0.89	+1.6
3,804,501	+				-1.5
3,804,502	-				+1.1
3,804,502	-				-0.5
3,804,516	+				+0.9
3,804,699	+		PP_3363	0.26	-2.2
3,804,907	+		PP_3363	0.59	-1.1
3,804,907	+		PP_3363	0.59	+0.4
3,804,907	+		PP_3363	0.59	-0.3
3,804,908	-		PP_3363	0.59	+0.4
3,804,908	-		PP_3363	0.59	+0.0
3,804,908	-				+0.9
3,805,166	+				-0.1
3,805,190	-				+0.2
3,805,205	-				-1.8
3,805,235	-				+0.4
3,805,243	-				-2.3
3,805,326	-				-0.1
3,805,391	+				+0.7
3,805,391	+				-0.7
3,805,391	+				-0.8
3,805,391	+				-1.0
3,805,391	+				-1.4
3,805,392	-				+2.2
3,805,404	+				-2.2
3,805,404	+				-1.5
3,805,539	+				-0.4
3,805,539	+				+2.9
3,805,539	+				-1.0
3,805,540	-				+2.5
3,805,550	-				+1.1
3,805,597	+				+0.9
3,805,598	-				-1.4
3,805,598	-				+0.9
3,805,598	-				-0.1
3,805,703	+		PP_3364	0.12	+0.5
3,805,703	+		PP_3364	0.12	+2.7
3,805,703	+		PP_3364	0.12	+1.9
3,805,703	+		PP_3364	0.12	+0.9
3,805,877	+		PP_3364	0.19	+0.9
3,805,878	-		PP_3364	0.19	+2.9
3,805,878	-		PP_3364	0.19	-0.4
3,805,884	+		PP_3364	0.20	+0.2
3,805,884	+		PP_3364	0.20	+0.4
3,805,884	+		PP_3364	0.20	+0.6
3,805,885	-		PP_3364	0.20	-0.1
3,805,885	-		PP_3364	0.20	+0.8
3,805,956	-		PP_3364	0.22	+0.7
3,805,998	-		PP_3364	0.24	-1.3
3,806,041	+		PP_3364	0.26	+0.2
3,806,041	+		PP_3364	0.26	+0.9
3,806,042	-		PP_3364	0.26	+1.2
3,806,096	+		PP_3364	0.28	-0.4
3,806,097	-		PP_3364	0.28	+0.5
3,806,097	-		PP_3364	0.28	+1.2
3,806,135	+		PP_3364	0.29	+0.0
3,806,135	+		PP_3364	0.29	+1.2
3,806,136	-		PP_3364	0.30	-1.1
3,806,223	-		PP_3364	0.33	+0.2
3,806,293	+		PP_3364	0.36	+0.8
3,806,603	+		PP_3364	0.48	-0.9
3,806,608	+		PP_3364	0.48	-1.3
3,806,608	+		PP_3364	0.48	+0.6
3,806,609	-		PP_3364	0.48	+0.9
3,806,609	-		PP_3364	0.48	+0.9
3,806,609	-		PP_3364	0.48	+1.2
3,806,661	-		PP_3364	0.50	+0.6
3,806,727	-		PP_3364	0.53	-0.1
3,806,727	-		PP_3364	0.53	+0.8
3,806,727	-		PP_3364	0.53	+0.9
3,806,882	-		PP_3364	0.59	+1.9
3,806,882	-		PP_3364	0.59	+1.5
3,807,029	+		PP_3364	0.65	-1.4
3,807,029	+		PP_3364	0.65	+0.1
3,807,030	-		PP_3364	0.65	-1.2
3,807,257	+		PP_3364	0.74	-0.4
3,807,257	+		PP_3364	0.74	-0.7
3,807,257	+		PP_3364	0.74	-0.3
3,807,257	+		PP_3364	0.74	-1.5
3,807,257	+		PP_3364	0.74	-1.6
3,807,258	-		PP_3364	0.74	+0.9
3,807,258	-		PP_3364	0.74	-2.6
3,807,258	-		PP_3364	0.74	+2.1
3,807,360	+		PP_3364	0.78	-3.7
3,807,446	+		PP_3364	0.81	-1.6
3,807,446	+		PP_3364	0.81	-0.1
3,807,447	-		PP_3364	0.81	+2.3
3,807,591	+		PP_3364	0.87	+0.6
3,807,592	-		PP_3364	0.87	+1.0
3,807,592	-		PP_3364	0.87	-2.4
3,807,876	-				-0.3
3,807,951	+				-1.9
3,807,952	-				-1.5
3,807,992	+				-1.5
3,807,992	+				-0.2
3,807,992	+				+0.2
3,807,993	-				+1.1
3,807,994	+				+1.2
3,808,057	-				-0.9
3,808,057	-				-2.9
3,808,230	+		PP_3365	0.11	-3.7