Strain Fitness in Pseudomonas putida KT2440 around PP_3320

Experiment: pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 7
3,755,981	+		PP_3319	0.65	+1.9
3,755,981	+		PP_3319	0.65	-1.0
3,755,981	+		PP_3319	0.65	+0.8
3,756,010	+		PP_3319	0.66	-0.9
3,756,014	+		PP_3319	0.66	-0.1
3,756,014	+		PP_3319	0.66	+0.8
3,756,014	+		PP_3319	0.66	-1.0
3,756,015	-		PP_3319	0.66	+0.8
3,756,015	-		PP_3319	0.66	-0.4
3,756,015	-		PP_3319	0.66	-0.3
3,756,015	-		PP_3319	0.66	+1.5
3,756,060	+		PP_3319	0.68	+0.0
3,756,073	+		PP_3319	0.69	+1.0
3,756,074	-		PP_3319	0.69	-2.4
3,756,192	-		PP_3319	0.74	-0.6
3,756,245	-		PP_3319	0.77	+0.1
3,756,245	-		PP_3319	0.77	-0.1
3,756,266	+		PP_3319	0.77	-0.9
3,756,266	+		PP_3319	0.77	+0.9
3,756,281	-		PP_3319	0.78	-2.2
3,756,326	+		PP_3319	0.80	+0.4
3,756,326	+		PP_3319	0.80	-0.6
3,756,326	+		PP_3319	0.80	-1.9
3,756,327	-		PP_3319	0.80	-0.8
3,756,382	+		PP_3319	0.83	-2.3
3,756,454	+		PP_3319	0.86	+0.1
3,756,455	-		PP_3319	0.86	+0.7
3,756,520	+		PP_3319	0.89	-0.4
3,756,706	-				-0.9
3,756,708	+				+1.8
3,756,708	+				+1.5
3,756,708	+				+1.4
3,756,709	-				-0.1
3,756,760	-				-0.9
3,756,800	+				+0.1
3,756,819	-				+1.3
3,756,884	-				-0.9
3,756,911	+				+1.0
3,756,912	-				+3.7
3,756,912	-				-0.5
3,756,950	+				+1.1
3,756,955	+				-3.2
3,756,956	-				-1.4
3,756,990	+		PP_3320	0.26	-0.4
3,756,990	+		PP_3320	0.26	+1.7
3,756,991	-		PP_3320	0.26	+0.4
3,756,991	-		PP_3320	0.26	-0.7
3,757,092	-		PP_3320	0.86	+2.5
3,757,092	-		PP_3320	0.86	+5.3
3,757,092	-		PP_3320	0.86	+2.5
3,757,205	-				+0.8
3,757,220	+				-0.6
3,757,220	+				+0.5
3,757,221	-				-0.4
3,757,221	-				+1.1
3,757,221	-				-0.1
3,757,293	+		PP_3321	0.22	-0.6
3,757,294	-		PP_3321	0.22	+0.5
3,757,342	-		PP_3321	0.32	+1.2
3,757,342	-		PP_3321	0.32	+0.4
3,757,342	-		PP_3321	0.32	+1.1
3,757,395	+		PP_3321	0.42	-1.2
3,757,395	+		PP_3321	0.42	-1.2
3,757,395	+		PP_3321	0.42	+0.7
3,757,395	+		PP_3321	0.42	-0.4
3,757,396	-		PP_3321	0.42	-1.6
3,757,396	-		PP_3321	0.42	-1.4
3,757,396	-		PP_3321	0.42	-1.9
3,757,396	-		PP_3321	0.42	+0.7
3,757,467	+		PP_3321	0.56	-0.6
3,757,467	+		PP_3321	0.56	-1.4
3,757,468	-		PP_3321	0.56	-2.1
3,757,468	-		PP_3321	0.56	+1.8
3,757,569	+		PP_3321	0.76	+2.1
3,757,570	-		PP_3321	0.76	-0.1
3,757,570	-		PP_3321	0.76	-0.6
3,757,703	+				+0.4
3,757,704	-				-4.0
3,757,704	-				-1.6
3,757,704	-				-0.6
3,757,881	+		PP_3322	0.19	-2.2
3,757,882	-		PP_3322	0.19	+0.9
3,757,914	+		PP_3322	0.23	-0.4
3,757,915	-		PP_3322	0.23	-0.1
3,758,096	+		PP_3322	0.41	+0.9
3,758,097	-		PP_3322	0.41	+1.5
3,758,097	-		PP_3322	0.41	-0.9
3,758,097	-		PP_3322	0.41	-0.6