Strain Fitness in Pseudomonas putida KT2440 around PP_3238

Experiment: pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 7
3,673,099	-		PP_3237	0.16	-1.2
3,673,374	-		PP_3237	0.47	-0.0
3,673,374	-		PP_3237	0.47	+0.3
3,673,553	+		PP_3237	0.67	+0.3
3,673,553	+		PP_3237	0.67	-0.5
3,673,554	-		PP_3237	0.67	-0.1
3,673,554	-		PP_3237	0.67	-0.3
3,673,571	+				+0.9
3,673,571	+		PP_3237	0.69	-0.3
3,673,792	+				-0.1
3,673,792	+				-0.5
3,673,811	+				+0.7
3,673,811	+				-0.7
3,673,811	+				-0.4
3,673,828	+				+0.9
3,673,841	+				-1.1
3,673,842	-				+0.6
3,673,842	-				+1.6
3,673,842	-				-1.2
3,673,924	-				+2.5
3,674,042	-		PP_3238	0.10	+3.9
3,674,185	+		PP_3238	0.35	-3.1
3,674,199	+				+0.9
3,674,218	+		PP_3238	0.41	-0.6
3,674,218	+		PP_3238	0.41	+1.9
3,674,218	+		PP_3238	0.41	-0.3
3,674,297	+		PP_3238	0.55	-1.7
3,674,297	+		PP_3238	0.55	+1.3
3,674,330	-				+0.9
3,674,351	-		PP_3238	0.64	+3.2
3,674,437	-		PP_3238	0.79	+2.5
3,674,456	+		PP_3238	0.83	+2.7
3,674,569	+				-1.3
3,674,576	+				-0.2
3,674,623	+				-0.9
3,674,623	+				-0.1
3,674,623	+				-0.3
3,674,875	+				-1.0
3,674,875	+				+0.9
3,674,875	+				-2.8
3,674,875	+				+1.4
3,674,875	+				+0.2
3,674,876	-				-1.5
3,674,876	-				+0.7
3,674,879	+				+0.6
3,675,418	+		PP_3239	0.64	-1.2
3,675,419	-		PP_3239	0.64	-0.2
3,675,462	-		PP_3239	0.68	+2.9