Strain Fitness in Pseudomonas putida KT2440 around PP_3167

Experiment: pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 7
3,587,157	+				-1.5
3,587,186	-				+1.8
3,587,197	-				-2.3
3,587,231	-				-2.3
3,587,345	+		PP_3166	0.20	+1.1
3,587,346	-		PP_3166	0.20	-1.7
3,587,492	+		PP_3166	0.36	+0.6
3,587,492	+		PP_3166	0.36	-0.7
3,587,493	-		PP_3166	0.36	+2.1
3,587,493	-		PP_3166	0.36	-0.2
3,587,657	+		PP_3166	0.54	+0.0
3,587,658	-		PP_3166	0.54	-0.1
3,587,688	-		PP_3166	0.57	+0.1
3,587,688	-		PP_3166	0.57	-1.3
3,587,759	+		PP_3166	0.65	+0.1
3,587,759	+		PP_3166	0.65	+0.8
3,587,845	+		PP_3166	0.74	+0.6
3,587,845	+		PP_3166	0.74	+0.2
3,587,884	-		PP_3166	0.79	-1.7
3,587,903	+		PP_3166	0.81	-0.8
3,587,903	+		PP_3166	0.81	-0.4
3,587,903	+		PP_3166	0.81	+1.9
3,587,904	-		PP_3166	0.81	-0.7
3,587,904	-		PP_3166	0.81	-1.5
3,587,904	-		PP_3166	0.81	+1.3
3,587,924	+		PP_3166	0.83	-0.5
3,588,295	+		PP_3167	0.11	-0.8
3,588,600	+		PP_3167	0.35	-0.1
3,588,601	-		PP_3167	0.35	-0.2
3,588,613	-		PP_3167	0.36	-0.6
3,588,703	+		PP_3167	0.43	-2.9
3,588,703	+		PP_3167	0.43	-2.3
3,588,734	-		PP_3167	0.46	+0.2
3,588,786	+		PP_3167	0.50	-1.5
3,588,998	+		PP_3167	0.66	+0.1
3,588,998	+		PP_3167	0.66	-0.6
3,589,093	+				+0.9
3,589,097	+		PP_3167	0.74	-0.5
3,589,123	+		PP_3167	0.76	-1.8
3,589,123	+		PP_3167	0.76	-1.1
3,589,124	-		PP_3167	0.76	-1.4
3,589,131	-		PP_3167	0.77	-0.3
3,589,217	-		PP_3167	0.84	-3.3
3,589,217	-		PP_3167	0.84	+0.4
3,589,447	+				+1.2
3,589,587	+				-1.5
3,589,588	-				-0.6
3,589,591	+				-0.1
3,589,594	+				+0.5
3,589,690	+		PP_3168	0.17	-0.3
3,589,820	-		PP_3168	0.27	-1.6
3,589,820	-		PP_3168	0.27	-2.5
3,589,820	-		PP_3168	0.27	+0.1
3,589,918	-		PP_3168	0.35	-2.3
3,589,918	-		PP_3168	0.35	+0.9
3,589,939	+		PP_3168	0.37	+1.4
3,589,939	+		PP_3168	0.37	-0.3
3,589,940	-		PP_3168	0.37	+0.0
3,589,983	+		PP_3168	0.40	+0.3
3,589,983	+		PP_3168	0.40	+2.1
3,589,984	-		PP_3168	0.40	-1.5
3,590,099	-		PP_3168	0.49	-0.2
3,590,114	-		PP_3168	0.51	+0.2
3,590,153	-		PP_3168	0.54	-0.4
3,590,173	+		PP_3168	0.55	+0.1
3,590,173	+		PP_3168	0.55	-0.3
3,590,173	+		PP_3168	0.55	+1.4
3,590,173	+		PP_3168	0.55	-1.5
3,590,173	+		PP_3168	0.55	+0.9
3,590,173	+		PP_3168	0.55	+2.7
3,590,174	-		PP_3168	0.55	+0.9
3,590,174	-		PP_3168	0.55	-0.7
3,590,174	-		PP_3168	0.55	+0.3
3,590,226	-		PP_3168	0.60	+0.4
3,590,246	-		PP_3168	0.61	-1.1
3,590,246	-		PP_3168	0.61	+0.1
3,590,246	-		PP_3168	0.61	-1.5
3,590,365	+		PP_3168	0.71	-1.7
3,590,365	+		PP_3168	0.71	+0.5
3,590,365	+		PP_3168	0.71	-2.3