Strain Fitness in Pseudomonas putida KT2440 around PP_3143

Experiment: pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 7
3,558,304	+		PP_3142	0.42	-0.4
3,558,305	-		PP_3142	0.42	-0.3
3,558,347	-		PP_3142	0.45	-2.9
3,558,347	-				+0.9
3,558,353	+		PP_3142	0.46	-2.0
3,558,399	-		PP_3142	0.49	+0.6
3,558,399	-		PP_3142	0.49	+1.8
3,558,472	+		PP_3142	0.54	-0.6
3,558,603	+		PP_3142	0.63	+0.9
3,558,603	+		PP_3142	0.63	-0.5
3,558,603	+		PP_3142	0.63	+0.2
3,558,670	+		PP_3142	0.68	+2.0
3,558,864	+		PP_3142	0.82	-0.3
3,559,094	-				+0.8
3,559,094	-				-0.4
3,559,118	+				-0.3
3,559,118	+				+0.5
3,559,119	-				-2.5
3,559,262	-		PP_3143	0.11	+2.2
3,559,273	+		PP_3143	0.12	+0.9
3,559,274	-		PP_3143	0.12	-1.6
3,559,274	-		PP_3143	0.12	+0.3
3,559,297	-		PP_3143	0.15	+0.9
3,559,466	-		PP_3143	0.33	+0.8
3,559,483	+				-0.1
3,559,484	-		PP_3143	0.35	+0.3
3,559,640	-		PP_3143	0.51	+1.7
3,559,864	+		PP_3143	0.75	+1.3
3,560,055	+				+1.7
3,560,055	+				-0.7
3,560,113	+				-0.1
3,560,182	+				+1.0
3,560,182	+				-0.5
3,560,182	+				+0.5
3,560,182	+				-0.1
3,560,182	+				+0.8
3,560,182	+				+0.9
3,560,182	+				+0.5
3,560,183	-				+0.9
3,560,183	-				-1.5
3,560,183	-				+2.5
3,560,183	-				+2.9
3,560,183	-				+0.9
3,560,183	-				-2.4
3,560,183	-				+1.1
3,560,242	+				-1.3
3,560,243	-				-1.6
3,560,252	-				-1.3
3,560,373	+				-0.3
3,560,451	+		PP_3144	0.15	-3.1
3,560,452	-		PP_3144	0.15	+3.7
3,560,610	-		PP_3144	0.26	-1.5
3,560,757	-		PP_3144	0.37	+1.1
3,561,097	+		PP_3144	0.62	+0.9
3,561,097	+		PP_3144	0.62	-3.9
3,561,097	+		PP_3144	0.62	+3.5