Strain Fitness in Pseudomonas putida KT2440 around PP_2916

Experiment: pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 7
3,315,208	+		PP_2914	0.83	+2.2
3,315,208	+		PP_2914	0.83	-0.0
3,315,208	+		PP_2914	0.83	-0.4
3,315,209	-		PP_2914	0.83	-0.0
3,315,224	-		PP_2914	0.84	+1.3
3,315,471	-				-2.4
3,315,471	-				+0.1
3,315,471	-				-3.0
3,315,704	+		PP_2915	0.35	+0.7
3,315,994	-				+1.0
3,316,106	-				+2.7
3,316,197	+				+2.4
3,316,216	+				-0.1
3,316,217	-				+2.0
3,316,280	+		PP_2916	0.18	-2.7
3,316,281	-		PP_2916	0.18	+1.0
3,316,281	-		PP_2916	0.18	-2.4
3,316,403	+		PP_2916	0.37	-0.6
3,316,403	+		PP_2916	0.37	-0.8
3,316,403	+		PP_2916	0.37	-0.2
3,316,404	-		PP_2916	0.37	-1.0
3,316,660	-		PP_2916	0.78	-1.6
3,316,746	-				+0.1
3,316,793	+				-1.8
3,316,794	-				+0.5
3,316,794	-				-1.6
3,316,794	-				+2.6
3,316,838	+				+0.6
3,316,838	+				+2.9
3,316,839	-				-1.0
3,316,855	-				+1.0
3,317,344	-		PP_2918	0.18	-0.1
3,317,541	+		PP_2918	0.28	-1.0
3,317,541	+		PP_2918	0.28	-1.3
3,317,542	-		PP_2918	0.28	+0.1
3,317,542	-		PP_2918	0.28	+0.7
3,317,542	-		PP_2918	0.28	-0.6
3,317,683	-		PP_2918	0.34	+1.6
3,317,683	-		PP_2918	0.34	+1.0
3,317,712	+		PP_2918	0.36	-1.6
3,317,713	-		PP_2918	0.36	-1.6
3,317,713	-		PP_2918	0.36	+1.8
3,317,713	-		PP_2918	0.36	-0.9
3,317,769	+		PP_2918	0.39	+1.6
3,317,770	-		PP_2918	0.39	+0.7
3,317,770	-		PP_2918	0.39	+1.1
3,317,770	-		PP_2918	0.39	-1.3
3,317,770	-		PP_2918	0.39	-0.4
3,317,775	+		PP_2918	0.39	-0.6
3,317,776	-		PP_2918	0.39	-1.9
3,317,776	-		PP_2918	0.39	-1.5
3,317,779	+		PP_2918	0.39	+0.3
3,317,779	+		PP_2918	0.39	-0.4
3,317,780	-		PP_2918	0.39	-0.4
3,317,780	-		PP_2918	0.39	-2.4
3,317,780	-		PP_2918	0.39	+1.0
3,317,780	-		PP_2918	0.39	+1.0