Strain Fitness in Pseudomonas putida KT2440 around PP_2852

Experiment: pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 7
3,252,562	+				+0.1
3,252,753	+				-0.5
3,252,829	-		PP_2851	0.16	-1.5
3,252,829	-		PP_2851	0.16	-0.9
3,252,870	+		PP_2851	0.22	+0.6
3,252,871	-		PP_2851	0.22	-1.3
3,252,871	-		PP_2851	0.22	-0.4
3,252,879	+		PP_2851	0.23	-0.9
3,252,879	+		PP_2851	0.23	-4.5
3,252,880	-		PP_2851	0.23	+2.8
3,252,880	-		PP_2851	0.23	+3.0
3,252,945	+		PP_2851	0.32	-3.8
3,252,945	+		PP_2851	0.32	-1.8
3,252,954	+		PP_2851	0.33	+3.0
3,252,954	+		PP_2851	0.33	-1.5
3,252,954	+		PP_2851	0.33	-2.7
3,252,955	-		PP_2851	0.33	-0.7
3,252,955	-		PP_2851	0.33	-2.9
3,252,955	-		PP_2851	0.33	-0.2
3,252,955	-		PP_2851	0.33	-0.1
3,252,961	-		PP_2851	0.34	+1.3
3,253,029	+		PP_2851	0.43	-0.6
3,253,080	+		PP_2851	0.50	-2.5
3,253,147	-		PP_2851	0.60	+0.4
3,253,213	-		PP_2851	0.69	-2.0
3,253,530	-				-1.6
3,253,553	+				+0.6
3,253,554	-				-0.4
3,253,629	+				+1.1
3,253,629	+				-1.9
3,253,629	+				+0.5
3,253,645	+				-0.3
3,253,735	-				+2.0
3,253,795	+		PP_2852	0.12	+0.4
3,253,795	+		PP_2852	0.12	+1.2
3,253,796	-		PP_2852	0.12	+0.1
3,253,796	-		PP_2852	0.12	+0.5
3,254,048	-		PP_2852	0.23	+1.4
3,254,084	-		PP_2852	0.25	-0.9
3,254,161	+		PP_2852	0.28	-0.0
3,254,161	+		PP_2852	0.28	+2.7
3,254,162	-		PP_2852	0.28	+1.1
3,254,270	+		PP_2852	0.33	-1.7
3,254,278	+		PP_2852	0.34	-1.5
3,254,278	+		PP_2852	0.34	-0.0
3,254,327	+		PP_2852	0.36	+0.4
3,254,327	+		PP_2852	0.36	+0.1
3,254,327	+		PP_2852	0.36	-1.6
3,254,328	-		PP_2852	0.36	-0.8
3,254,328	-		PP_2852	0.36	-0.6
3,254,328	-		PP_2852	0.36	+2.6
3,254,509	+		PP_2852	0.44	-0.2
3,254,599	+		PP_2852	0.48	-0.3
3,254,599	+		PP_2852	0.48	-0.4
3,254,599	+		PP_2852	0.48	+1.6
3,254,600	-		PP_2852	0.48	-1.4
3,254,600	-		PP_2852	0.48	+1.0
3,254,600	-		PP_2852	0.48	+0.8
3,254,656	+				+1.0
3,254,656	+		PP_2852	0.51	+0.4
3,254,758	+		PP_2852	0.55	+1.9
3,254,759	-				-0.6
3,254,759	-		PP_2852	0.56	-1.0
3,254,759	-		PP_2852	0.56	+1.8
3,254,784	+		PP_2852	0.57	-1.3
3,254,785	-		PP_2852	0.57	+2.1
3,254,785	-		PP_2852	0.57	+0.3
3,254,870	-		PP_2852	0.61	-0.0
3,254,890	+		PP_2852	0.61	-1.8
3,254,891	-		PP_2852	0.62	+0.8
3,254,926	+		PP_2852	0.63	+0.2
3,254,927	-		PP_2852	0.63	-0.6
3,255,051	-		PP_2852	0.69	+0.8
3,255,051	-		PP_2852	0.69	-2.0
3,255,051	-		PP_2852	0.69	+0.5
3,255,051	-		PP_2852	0.69	-0.9
3,255,229	+		PP_2852	0.77	-2.8
3,255,229	+		PP_2852	0.77	-2.0
3,255,230	-		PP_2852	0.77	-0.5
3,255,230	-		PP_2852	0.77	-0.4
3,255,258	+				+1.0
3,255,259	-		PP_2852	0.78	+1.0
3,255,259	-		PP_2852	0.78	-1.6
3,255,297	+		PP_2852	0.80	-0.5
3,255,463	+		PP_2852	0.88	+0.3
3,255,464	-		PP_2852	0.88	+0.8
3,255,467	+		PP_2852	0.88	-0.3
3,255,467	+				+1.0
3,255,467	+		PP_2852	0.88	+0.9
3,255,468	-		PP_2852	0.88	+1.0
3,255,468	-		PP_2852	0.88	+2.1
3,255,505	-		PP_2852	0.89	+0.5
3,255,591	+				-1.8
3,255,816	+				+0.1
3,255,816	+				+1.0
3,255,816	+				-1.8
3,255,817	-				+1.4
3,255,817	-				+0.1
3,255,817	-				+4.1
3,255,990	-				+0.7
3,256,009	+		PP_2853	0.11	-0.0
3,256,009	+		PP_2853	0.11	-1.1
3,256,010	-		PP_2853	0.11	+1.4
3,256,010	-		PP_2853	0.11	-3.7
3,256,225	+		PP_2853	0.27	-1.1
3,256,225	+		PP_2853	0.27	+0.4
3,256,225	+		PP_2853	0.27	-0.2
3,256,225	+		PP_2853	0.27	-2.5
3,256,226	-		PP_2853	0.28	+0.4
3,256,226	-		PP_2853	0.28	-2.2
3,256,226	-		PP_2853	0.28	-1.5
3,256,232	-		PP_2853	0.28	+0.5
3,256,232	-		PP_2853	0.28	-2.0
3,256,302	+		PP_2853	0.33	-5.0
3,256,302	+		PP_2853	0.33	-1.2
3,256,302	+		PP_2853	0.33	-1.5
3,256,302	+		PP_2853	0.33	-0.4
3,256,302	+		PP_2853	0.33	+0.1
3,256,302	+		PP_2853	0.33	+1.6
3,256,303	-		PP_2853	0.34	+0.1
3,256,303	-		PP_2853	0.34	-0.1
3,256,303	-		PP_2853	0.34	-0.2
3,256,303	-		PP_2853	0.34	+2.6
3,256,303	-		PP_2853	0.34	-1.9
3,256,378	+		PP_2853	0.39	+0.8
3,256,555	+		PP_2853	0.53	+2.6
3,256,555	+		PP_2853	0.53	-0.1
3,256,575	+		PP_2853	0.55	-1.1
3,256,616	+		PP_2853	0.58	-0.2
3,256,616	+		PP_2853	0.58	+0.5
3,256,618	+		PP_2853	0.58	+1.6
3,256,619	-		PP_2853	0.58	-1.5
3,256,619	-		PP_2853	0.58	-0.8
3,256,736	-		PP_2853	0.67	+0.8
3,256,736	-		PP_2853	0.67	-0.2
3,256,736	-		PP_2853	0.67	+2.4