Strain Fitness in Pseudomonas putida KT2440 around PP_2820

Experiment: pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 7
3,217,941	-		PP_2819	0.52	+3.3
3,218,149	+		PP_2819	0.67	+0.6
3,218,149	+		PP_2819	0.67	+0.5
3,218,150	-		PP_2819	0.67	-1.8
3,218,150	-		PP_2819	0.67	+0.3
3,218,324	+		PP_2819	0.79	+0.1
3,218,463	-		PP_2819	0.89	-1.6
3,218,493	-				-0.5
3,218,516	+				-1.3
3,218,516	+				+1.5
3,218,516	+				+1.7
3,218,516	+				+1.8
3,218,517	-				+0.0
3,218,803	+		PP_2820	0.18	+1.0
3,218,804	-		PP_2820	0.19	-2.0
3,218,804	-		PP_2820	0.19	-1.4
3,218,804	-		PP_2820	0.19	+1.0
3,219,092	-		PP_2820	0.70	-3.3
3,219,277	+				+1.0
3,219,311	-				+0.3
3,219,331	+				-1.0
3,219,488	+		PP_2821	0.13	-0.6
3,219,490	+		PP_2821	0.14	+1.5
3,219,490	+		PP_2821	0.14	+2.0
3,219,491	-		PP_2821	0.14	-1.6
3,219,596	-		PP_2821	0.40	-2.0
3,219,638	-		PP_2821	0.50	-0.4
3,219,708	+		PP_2821	0.67	+1.4
3,219,708	+		PP_2821	0.67	-1.8
3,219,708	+		PP_2821	0.67	-0.2
3,219,709	-		PP_2821	0.68	+0.3
3,219,709	-		PP_2821	0.68	+1.1
3,219,852	+				-0.7
3,219,852	+				-1.4
3,219,894	+				+0.3
3,219,894	+				+0.4
3,219,895	-				-1.8
3,219,895	-				+0.3
3,220,053	+		PP_5539	0.17	-0.0
3,220,053	+		PP_5539	0.17	-0.4
3,220,065	+		PP_5539	0.18	-1.5
3,220,110	+		PP_5539	0.22	-1.3
3,220,110	+		PP_5539	0.22	+0.4
3,220,111	-		PP_5539	0.22	+0.7
3,220,114	+		PP_5539	0.23	+2.4
3,220,115	-		PP_5539	0.23	+0.1
3,220,115	-		PP_5539	0.23	-1.2
3,220,158	+		PP_5539	0.26	-1.0
3,220,159	-		PP_5539	0.27	-0.5
3,220,159	-		PP_5539	0.27	-1.8
3,220,159	-		PP_5539	0.27	+0.2
3,220,243	-		PP_5539	0.34	+0.2