Strain Fitness in Pseudomonas putida KT2440 around PP_2513

Experiment: pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 7
2,859,279	+		PP_2512	0.20	-0.7
2,859,279	+		PP_2512	0.20	+1.5
2,859,280	-		PP_2512	0.20	+0.5
2,859,436	-		PP_2512	0.48	-2.2
2,859,436	-		PP_2512	0.48	+0.8
2,859,457	+		PP_2512	0.52	-0.5
2,859,458	-		PP_2512	0.52	+1.0
2,859,458	-		PP_2512	0.52	-0.0
2,859,458	-		PP_2512	0.52	-1.0
2,859,488	+		PP_2512	0.57	+0.5
2,859,488	+		PP_2512	0.57	-0.1
2,859,489	-		PP_2512	0.57	-2.2
2,859,489	-		PP_2512	0.57	+1.5
2,859,506	-		PP_2512	0.60	+0.6
2,859,512	-		PP_2512	0.61	+1.0
2,859,599	+		PP_2512	0.77	+0.1
2,859,599	+		PP_2512	0.77	+0.5
2,859,599	+		PP_2512	0.77	-0.1
2,859,599	+		PP_2512	0.77	-1.6
2,859,600	-		PP_2512	0.77	+2.0
2,859,600	-		PP_2512	0.77	+1.2
2,859,600	-		PP_2512	0.77	+1.0
2,859,600	-		PP_2512	0.77	-3.9
2,859,600	-		PP_2512	0.77	-1.0
2,859,661	+		PP_2512	0.88	-0.5
2,859,778	+				+1.0
2,859,779	-				+0.1
2,859,779	-				-0.4
2,859,787	-				+2.0
2,859,787	-				-2.0
2,859,815	+		PP_5535	0.11	-0.3
2,859,836	-		PP_5535	0.16	+2.3
2,860,012	+		PP_5535	0.54	-1.2
2,860,012	+		PP_5535	0.54	+0.3
2,860,012	+		PP_5535	0.54	+0.6
2,860,013	-		PP_5535	0.54	+1.1
2,860,014	+		PP_5535	0.54	+4.0
2,860,015	-		PP_5535	0.55	-0.6
2,860,015	-		PP_5535	0.55	-0.6
2,860,015	-		PP_5535	0.55	-2.1
2,860,139	+		PP_5535	0.82	-1.6
2,860,139	+		PP_5535	0.82	-1.0
2,860,237	+				-0.8
2,860,269	+				+0.2
2,860,269	+				-0.5
2,860,467	+				+1.0
2,860,468	-				+1.0
2,860,898	+		PP_2513	0.60	-1.4
2,860,898	+		PP_2513	0.60	-0.6
2,860,899	-		PP_2513	0.60	-2.2
2,861,060	+		PP_2513	0.75	-1.9
2,861,061	-		PP_2513	0.75	-0.0
2,861,102	+		PP_2513	0.79	-0.3
2,861,102	+		PP_2513	0.79	-1.7
2,861,314	+				+0.6
2,861,365	+				-1.0
2,861,366	-				-1.6
2,861,404	+				-0.8
2,861,404	+				+0.6
2,861,404	+				+1.0
2,861,405	-				-1.1
2,861,405	-				+0.4
2,861,618	+		PP_2514	0.40	+1.0
2,861,619	-		PP_2514	0.40	-0.9
2,861,619	-		PP_2514	0.40	+1.5
2,861,793	+		PP_2514	0.64	-0.5
2,861,794	-		PP_2514	0.64	+0.8
2,861,794	-		PP_2514	0.64	-0.1
2,861,916	-		PP_2514	0.81	+2.2
2,862,008	+				+0.1
2,862,008	+				+1.0
2,862,011	+				-2.5
2,862,011	+				-0.2
2,862,012	-				-0.0
2,862,012	-				-2.1
2,862,012	-				-0.2
2,862,012	-				-2.0
2,862,134	-		PP_2515	0.11	+1.2
2,862,165	-		PP_2515	0.15	+0.2
2,862,174	+		PP_2515	0.16	-1.8
2,862,174	+		PP_2515	0.16	-2.4
2,862,174	+		PP_2515	0.16	-1.6
2,862,174	+		PP_2515	0.16	+1.3
2,862,174	+		PP_2515	0.16	+1.2
2,862,175	-		PP_2515	0.16	+0.4
2,862,175	-		PP_2515	0.16	+0.2
2,862,175	-		PP_2515	0.16	+0.9
2,862,177	+		PP_2515	0.17	-1.5
2,862,177	+		PP_2515	0.17	+2.0
2,862,178	-		PP_2515	0.17	-0.6
2,862,178	-		PP_2515	0.17	-1.2
2,862,222	+		PP_2515	0.23	+0.1
2,862,223	-		PP_2515	0.23	+3.3
2,862,244	+		PP_2515	0.25	-0.7
2,862,244	+		PP_2515	0.25	+0.3
2,862,245	-		PP_2515	0.25	+0.3
2,862,306	+		PP_2515	0.33	+3.9