Strain Fitness in Pseudomonas putida KT2440 around PP_2435

Experiment: pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 7
2,780,287	+		PP_2433	0.12	+1.9
2,780,396	+		PP_2433	0.35	-1.4
2,780,396	+		PP_2433	0.35	-2.3
2,780,727	+				-0.9
2,780,728	-				-0.8
2,780,761	+		PP_2434	0.13	+0.6
2,780,762	-		PP_2434	0.13	-1.6
2,780,762	-		PP_2434	0.13	-0.1
2,780,762	-		PP_2434	0.13	+0.7
2,780,799	+		PP_2434	0.22	-0.1
2,780,799	+		PP_2434	0.22	-3.0
2,780,800	-		PP_2434	0.22	+0.7
2,780,800	-		PP_2434	0.22	+1.9
2,780,800	-		PP_2434	0.22	-0.1
2,780,874	-		PP_2434	0.39	+3.3
2,781,057	+		PP_2434	0.81	+0.9
2,781,057	+		PP_2434	0.81	+0.9
2,781,057	+		PP_2434	0.81	-0.8
2,781,057	+		PP_2434	0.81	+2.6
2,781,138	+				-2.4
2,781,139	-				-0.8
2,781,653	+		PP_2435	0.41	+1.9
2,781,653	+		PP_2435	0.41	+2.2
2,781,654	-		PP_2435	0.42	+0.5
2,781,654	-		PP_2435	0.42	+0.0
2,781,654	-		PP_2435	0.42	+2.8
2,781,681	-		PP_2435	0.44	+2.9
2,781,723	+		PP_2435	0.47	+0.4
2,781,723	+		PP_2435	0.47	-0.1
2,782,045	-		PP_2435	0.74	+1.5
2,782,090	+		PP_2435	0.77	+0.1
2,782,090	+		PP_2435	0.77	+0.4
2,782,263	+				+0.5
2,782,283	+				-2.8
2,782,284	-				+0.1
2,782,353	-				-0.2
2,782,474	+				-1.5
2,782,475	-				+0.2
2,782,608	+		PP_2436	0.12	+0.6
2,782,608	+		PP_2436	0.12	+1.3
2,782,737	+		PP_2436	0.26	-2.2
2,782,738	-		PP_2436	0.26	-2.1
2,782,801	-		PP_2436	0.33	+3.3
2,782,801	-		PP_2436	0.33	+0.9
2,782,828	+		PP_2436	0.36	-0.3
2,782,828	+		PP_2436	0.36	-0.6
2,782,829	-		PP_2436	0.36	-0.6
2,782,829	-		PP_2436	0.36	+2.5
2,782,829	-		PP_2436	0.36	+0.9
2,782,852	-		PP_2436	0.38	-2.1
2,782,911	+		PP_2436	0.45	-3.6
2,782,911	+		PP_2436	0.45	-1.4
2,783,326	+		PP_2436	0.90	+0.9
2,783,327	-		PP_2436	0.90	+0.1