Strain Fitness in Pseudomonas putida KT2440 around PP_2294

Experiment: pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 7
2,620,255	+		PP_2293	0.47	-0.8
2,620,255	+		PP_2293	0.47	-2.5
2,620,256	-		PP_2293	0.47	+0.7
2,620,256	-		PP_2293	0.47	+0.3
2,620,266	-		PP_2293	0.48	-0.6
2,620,266	-		PP_2293	0.48	-0.2
2,620,266	-		PP_2293	0.48	+1.3
2,620,429	+		PP_2293	0.57	+1.5
2,620,430	-		PP_2293	0.57	-0.6
2,620,430	-		PP_2293	0.57	-2.2
2,620,463	+		PP_2293	0.59	+0.9
2,620,471	+		PP_2293	0.60	-0.1
2,620,472	-		PP_2293	0.60	-0.9
2,620,500	-		PP_2293	0.62	+0.3
2,620,500	-		PP_2293	0.62	-1.8
2,620,519	+		PP_2293	0.63	-0.6
2,620,520	-		PP_2293	0.63	+0.2
2,620,556	+		PP_2293	0.65	-3.9
2,620,557	-		PP_2293	0.65	+0.7
2,620,715	+		PP_2293	0.74	+0.0
2,620,715	+		PP_2293	0.74	-1.0
2,620,715	+		PP_2293	0.74	-1.4
2,620,715	+		PP_2293	0.74	+2.5
2,620,716	-		PP_2293	0.74	+2.9
2,620,898	-		PP_2293	0.85	-0.6
2,620,901	+				+3.7
2,620,901	+		PP_2293	0.85	+2.5
2,620,902	-		PP_2293	0.85	-2.0
2,620,902	-		PP_2293	0.85	-0.1
2,620,913	+		PP_2293	0.86	-0.9
2,620,914	-		PP_2293	0.86	+4.1
2,620,995	-				+0.0
2,621,001	+				+0.6
2,621,148	-				-1.6
2,621,154	-				-0.1
2,621,154	-				+0.9
2,621,154	-				+1.7
2,621,168	+				-0.8
2,621,169	-				+0.4
2,621,184	-				-0.9
2,621,234	+		PP_2294	0.11	-1.1
2,621,234	+		PP_2294	0.11	+1.5
2,621,234	+		PP_2294	0.11	-1.3
2,621,234	+		PP_2294	0.11	-0.8
2,621,234	+		PP_2294	0.11	-0.8
2,621,235	-		PP_2294	0.11	+0.4
2,621,235	-		PP_2294	0.11	-3.1
2,621,235	-		PP_2294	0.11	-0.9
2,621,235	-		PP_2294	0.11	-0.5
2,621,235	-		PP_2294	0.11	-1.1
2,621,253	+		PP_2294	0.15	-1.2
2,621,253	+		PP_2294	0.15	-1.8
2,621,257	+		PP_2294	0.16	-1.3
2,621,257	+		PP_2294	0.16	+0.2
2,621,258	-		PP_2294	0.16	+0.2
2,621,318	+		PP_2294	0.30	+0.9
2,621,318	+		PP_2294	0.30	-1.3
2,621,318	+				+0.9
2,621,318	+		PP_2294	0.30	-0.8
2,621,319	-		PP_2294	0.30	+5.1
2,621,358	-		PP_2294	0.39	-0.1
2,621,358	-		PP_2294	0.39	-0.2
2,621,358	-		PP_2294	0.39	-2.2
2,621,358	-		PP_2294	0.39	+1.9
2,621,454	+		PP_2294	0.61	+2.5
2,621,454	+		PP_2294	0.61	-1.8
2,621,455	-		PP_2294	0.61	-0.8
2,621,624	+				-0.1
2,621,641	+				-1.1
2,621,641	+				-1.5
2,621,641	+				+0.8
2,621,641	+				-1.3
2,621,641	+				+0.2
2,621,641	+				-1.7
2,621,641	+				+1.7
2,621,642	-				-0.8
2,621,642	-				+2.1
2,621,670	+				-1.0
2,621,670	+				+0.8
2,621,670	+				-2.2
2,621,670	+				-1.1
2,621,710	-				-1.4
2,621,768	+				-2.6
2,621,768	+				+0.3
2,621,769	-				-0.9
2,621,818	-				+0.4
2,621,826	-				-0.0
2,621,826	-				+0.2
2,621,856	+				-1.6
2,621,856	+				+1.4
2,621,866	+				+0.6
2,621,867	-				-1.8
2,621,867	-				-1.5
2,621,867	-				+1.9
2,621,896	+				-0.6
2,621,896	+				-0.4
2,621,896	+				-0.4
2,621,896	+				-1.2
2,621,896	+				+0.9
2,621,896	+				+0.5
2,621,897	-				+0.3
2,621,897	-				+0.4
2,621,897	-				+1.4
2,621,898	+				+0.9
2,621,899	-				+1.5
2,621,901	-				+2.9
2,621,901	-				+1.0
2,621,909	+				-0.6
2,621,909	+				+2.1
2,621,911	+				-0.1
2,621,912	-				-1.4
2,621,932	+				-0.6
2,621,932	+				-1.9
2,621,932	+				+1.9
2,621,932	+				-1.5
2,621,932	+				-0.6
2,621,933	-				-0.3
2,621,934	+				-2.8
2,621,934	+				+1.9
2,621,935	-				+2.4
2,621,935	-				+0.9
2,622,035	+		PP_5515	0.28	+1.6
2,622,035	+		PP_5515	0.28	+0.1
2,622,035	+		PP_5515	0.28	+2.3
2,622,036	-		PP_5515	0.28	+0.5
2,622,036	-		PP_5515	0.28	+0.6
2,622,037	+		PP_5515	0.29	+0.1
2,622,037	+		PP_5515	0.29	-0.1
2,622,037	+		PP_5515	0.29	-0.6
2,622,037	+		PP_5515	0.29	+1.2
2,622,038	-		PP_5515	0.29	+0.1
2,622,038	-		PP_5515	0.29	-0.4
2,622,039	+		PP_5515	0.30	-0.3
2,622,039	+		PP_5515	0.30	-1.4
2,622,039	+		PP_5515	0.30	-1.1
2,622,039	+		PP_5515	0.30	+0.8
2,622,039	+		PP_5515	0.30	+0.7
2,622,039	+		PP_5515	0.30	+0.6
2,622,040	-		PP_5515	0.30	+0.9
2,622,040	-		PP_5515	0.30	+0.1
2,622,040	-		PP_5515	0.30	+0.3
2,622,040	-		PP_5515	0.30	+1.5
2,622,040	-		PP_5515	0.30	-1.1
2,622,040	-		PP_5515	0.30	-0.1
2,622,090	+		PP_5515	0.51	+3.3
2,622,091	-		PP_5515	0.51	+0.9
2,622,164	-		PP_5515	0.81	-0.6
2,622,164	-		PP_5515	0.81	+0.5
2,622,383	+				+0.2
2,622,407	+				+1.5
2,622,407	+				+0.7
2,622,407	+				-1.0
2,622,408	-				-0.4
2,622,538	-				-0.3
2,622,538	-				-0.7
2,622,577	+				-1.2
2,622,577	+				-0.1
2,622,613	+		PP_5516	0.22	-1.6
2,622,613	+		PP_5516	0.22	+1.3
2,622,613	+		PP_5516	0.22	+0.4
2,622,614	-		PP_5516	0.22	+0.9
2,622,614	-		PP_5516	0.22	-0.7
2,622,614	-		PP_5516	0.22	+0.7
2,622,622	+		PP_5516	0.25	+2.9