Strain Fitness in Pseudomonas putida KT2440 around PP_2013

Experiment: pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 7
2,284,835	+				+1.0
2,284,991	+		PP_2013	0.25	-1.2
2,284,992	-		PP_2013	0.25	-3.1
2,284,992	-		PP_2013	0.25	-0.3
2,284,992	-		PP_2013	0.25	+3.8
2,285,042	+		PP_2013	0.30	-0.7
2,285,042	+		PP_2013	0.30	-2.2
2,285,043	-		PP_2013	0.30	+1.0
2,285,043	-		PP_2013	0.30	-1.7
2,285,144	+		PP_2013	0.41	-0.2
2,285,144	+		PP_2013	0.41	+0.7
2,285,235	-		PP_2013	0.50	-1.9
2,285,517	-		PP_2013	0.79	-0.4
2,285,606	+		PP_2013	0.88	-0.2
2,285,662	+				+2.2
2,286,109	+		PP_2014	0.44	-3.2
2,286,110	-		PP_2014	0.44	-0.4
2,286,110	-		PP_2014	0.44	+0.2
2,286,115	+		PP_2014	0.45	+4.3
2,286,115	+		PP_2014	0.45	+2.1
2,286,116	-		PP_2014	0.45	-3.7
2,286,116	-		PP_2014	0.45	-0.2
2,286,116	-		PP_2014	0.45	-3.7
2,286,223	+		PP_2014	0.57	+0.9
2,286,223	+		PP_2014	0.57	+0.2
2,286,323	-		PP_2014	0.68	+2.7
2,286,367	+		PP_2014	0.73	-0.6
2,286,367	+		PP_2014	0.73	-1.6
2,286,368	-		PP_2014	0.73	-1.8
2,286,470	+		PP_2014	0.85	+0.4
2,286,471	-		PP_2014	0.85	-0.3
2,286,588	+				-0.4
2,286,616	+				+4.0
2,286,616	+				-2.7
2,286,616	+				+1.9
2,286,616	+				-1.3
2,286,617	-				-1.1
2,286,617	-				+0.8
2,286,617	-				-2.0
2,286,617	-				+2.0
2,286,617	-				+1.0
2,286,617	-				+0.3