Strain Fitness in Pseudomonas putida KT2440 around PP_1894

Experiment: pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 7
2,136,267	+		PP_1893	0.80	+0.9
2,136,267	+		PP_1893	0.80	+0.4
2,136,267	+		PP_1893	0.80	+0.9
2,136,267	+		PP_1893	0.80	-3.9
2,136,267	+		PP_1893	0.80	-2.8
2,136,268	-		PP_1893	0.80	-1.9
2,136,268	-		PP_1893	0.80	-0.3
2,136,268	-		PP_1893	0.80	+0.9
2,136,457	-		PP_1893	0.88	-0.2
2,136,653	+				+0.1
2,136,653	+				+1.5
2,136,653	+				-2.6
2,136,654	-				-0.1
2,136,654	-				-0.7
2,136,654	-				-2.1
2,136,751	-				-0.6
2,136,751	-				+2.1
2,136,751	-				+0.6
2,136,797	+				+0.9
2,136,798	-				+0.9
2,136,798	-				-0.5
2,136,905	+				-0.4
2,136,905	+				+1.4
2,136,906	-				+1.9
2,136,994	+				+1.9
2,136,994	+				-0.2
2,136,994	+				+1.4
2,136,995	-				+0.2
2,136,995	-				-3.0
2,136,995	-				-0.6
2,137,004	+				+0.9
2,137,082	+				-0.3
2,137,082	+				+0.0
2,137,083	-				+0.2
2,137,105	-				-0.3
2,137,253	+		PP_1894	0.18	-1.0
2,137,253	+		PP_1894	0.18	+0.8
2,137,254	-		PP_1894	0.18	+2.9
2,137,270	+		PP_1894	0.21	+0.1
2,137,556	+		PP_1894	0.67	+0.9
2,137,595	-		PP_1894	0.73	-0.4
2,137,638	+		PP_1894	0.80	+0.9
2,137,639	-		PP_1894	0.80	+0.8
2,137,648	+		PP_1894	0.81	-0.0
2,137,648	+		PP_1894	0.81	+1.3
2,137,648	+		PP_1894	0.81	+1.3
2,137,649	-		PP_1894	0.81	+1.2
2,137,649	-		PP_1894	0.81	+0.9
2,137,649	-		PP_1894	0.81	-3.6
2,137,649	-		PP_1894	0.81	-0.1
2,137,649	-		PP_1894	0.81	+3.7
2,137,649	-		PP_1894	0.81	+0.5
2,137,649	-		PP_1894	0.81	-0.4
2,137,649	-		PP_1894	0.81	+2.7
2,137,687	+		PP_1894	0.88	-0.0
2,137,687	+		PP_1894	0.88	-1.7
2,137,687	+		PP_1894	0.88	+0.9
2,137,687	+		PP_1894	0.88	-0.7
2,137,688	-		PP_1894	0.88	-1.7
2,137,688	-		PP_1894	0.88	+1.9
2,137,688	-		PP_1894	0.88	+1.6
2,137,688	-		PP_1894	0.88	-2.1
2,137,688	-		PP_1894	0.88	+1.5
2,137,688	-		PP_1894	0.88	+0.1
2,137,706	-				-0.4
2,137,717	-				-0.3
2,137,733	-				-0.5
2,137,789	+				-2.1
2,137,801	+				-1.8
2,137,801	+				-0.5
2,137,801	+				-0.1
2,137,802	-				+0.4
2,137,802	-				-1.0
2,137,854	+				+4.1
2,137,855	-				+0.9
2,137,855	-				+1.0
2,137,855	-				-0.6
2,137,886	-				+0.9
2,137,897	+				+0.3
2,137,898	-				+2.0
2,137,898	-				-0.1
2,138,026	+		PP_1895	0.14	+0.9
2,138,213	+		PP_1895	0.34	+1.6
2,138,213	+		PP_1895	0.34	-1.5
2,138,213	+		PP_1895	0.34	-1.4
2,138,214	-		PP_1895	0.34	+0.1
2,138,214	-		PP_1895	0.34	+0.6
2,138,255	+		PP_1895	0.38	-0.2
2,138,510	-		PP_1895	0.66	+0.9
2,138,632	-		PP_1895	0.79	+3.9
2,138,668	+		PP_1895	0.83	-1.4