Strain Fitness in Pseudomonas putida KT2440 around PP_1643

Experiment: pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 7
1,837,392	-				+1.0
1,837,392	-				-1.2
1,837,409	+				+1.8
1,837,410	-				+0.7
1,837,410	-				+1.4
1,837,410	-				-1.1
1,837,410	-				+2.9
1,837,410	-				+1.1
1,837,802	+		PP_1642	0.62	-0.8
1,838,111	+				-1.5
1,838,111	+				+1.9
1,838,111	+				-3.1
1,838,111	+				-1.2
1,838,111	+				-0.5
1,838,111	+				-0.5
1,838,112	-				-0.2
1,838,112	-				+0.8
1,838,112	-				+1.6
1,838,112	-				-2.4
1,838,125	+				+0.7
1,838,126	-				-0.4
1,838,159	-				+0.8
1,838,209	+		PP_1643	0.13	-2.0
1,838,210	-		PP_1643	0.13	+1.9
1,838,210	-		PP_1643	0.13	-3.4
1,838,210	-		PP_1643	0.13	+1.5
1,838,214	+		PP_1643	0.14	+0.5
1,838,215	-		PP_1643	0.14	+0.1
1,838,311	+		PP_1643	0.37	+0.2
1,838,315	+		PP_1643	0.38	+0.6
1,838,315	+		PP_1643	0.38	+0.7
1,838,316	-		PP_1643	0.38	-0.0
1,838,316	-		PP_1643	0.38	+0.8
1,838,554	+				-3.8
1,838,691	-		PP_1644	0.21	+0.1
1,838,691	-		PP_1644	0.21	-1.1
1,838,736	-		PP_1644	0.29	+0.8
1,838,900	+		PP_1644	0.56	-0.4
1,838,901	-		PP_1644	0.56	+1.9
1,838,901	-		PP_1644	0.56	-2.5
1,838,947	+		PP_1644	0.63	-2.4
1,838,948	-		PP_1644	0.64	-2.0
1,838,987	+		PP_1644	0.70	+0.8
1,839,043	-		PP_1644	0.79	-4.0
1,839,043	-		PP_1644	0.79	-1.2
1,839,137	+				+0.8
1,839,138	-				-1.7
1,839,138	-				-0.3
1,839,140	+				-2.2
1,839,141	-				-3.4
1,839,156	-				-1.6
1,839,320	+		PP_1645	0.44	+3.1
1,839,320	+		PP_1645	0.44	+3.4
1,839,320	+		PP_1645	0.44	-1.2
1,839,320	+		PP_1645	0.44	+0.8
1,839,321	-		PP_1645	0.44	-1.9
1,839,321	-		PP_1645	0.44	-0.9
1,839,321	-		PP_1645	0.44	+0.6
1,839,322	+		PP_1645	0.44	-3.2
1,839,323	-		PP_1645	0.45	+0.6
1,839,418	+		PP_1645	0.71	-2.2
1,839,419	-		PP_1645	0.72	-0.0
1,839,494	+				+1.4
1,839,495	-				+0.8
1,839,500	-				+0.8
1,839,500	-				-0.2
1,839,554	+				+2.8
1,839,555	-				-0.4
1,839,555	-				-3.2