Strain Fitness in Pseudomonas putida KT2440 around PP_1394

Experiment: pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 7
1,588,278	-				-0.1
1,588,302	+				+0.1
1,588,302	+				-0.6
1,588,302	+				-0.7
1,588,302	+				+0.2
1,588,302	+				+0.5
1,588,303	-				-2.3
1,588,303	-				-0.7
1,588,303	-				+0.3
1,588,305	+				+0.7
1,588,825	+		PP_1393	0.69	+0.9
1,588,825	+		PP_1393	0.69	+0.9
1,588,825	+		PP_1393	0.69	+1.9
1,588,825	+		PP_1393	0.69	+0.2
1,588,825	+		PP_1393	0.69	-0.4
1,588,825	+		PP_1393	0.69	+0.8
1,588,825	+		PP_1393	0.69	-1.1
1,588,825	+		PP_1393	0.69	-0.6
1,588,826	-		PP_1393	0.69	+0.1
1,588,826	-		PP_1393	0.69	-1.4
1,588,826	-		PP_1393	0.69	+0.4
1,588,826	-		PP_1393	0.69	+3.2
1,588,826	-		PP_1393	0.69	-1.9
1,588,953	+		PP_1393	0.83	-0.6
1,589,008	+		PP_1393	0.90	-1.2
1,589,009	-		PP_1393	0.90	+0.4
1,589,009	-		PP_1393	0.90	-3.2
1,589,128	+				+0.2
1,589,128	+				-0.1
1,589,131	+				+0.0
1,589,132	-				-1.2
1,589,132	-				-1.7
1,589,184	+				-1.6
1,589,184	+				+1.2
1,589,184	+				-1.4
1,589,185	-				+0.3
1,589,185	-				+1.2
1,589,185	-				+0.9
1,589,185	-				-0.1
1,589,185	-				+3.2
1,589,188	+				-0.5
1,589,188	+				-1.3
1,589,188	+				+0.5
1,589,189	-				+0.1
1,589,255	-				+0.9
1,589,292	+				-0.6
1,589,292	+				+2.1
1,589,292	+				-3.2
1,589,292	+				-1.9
1,589,293	-				+0.1
1,589,383	+		PP_1394	0.10	+0.8
1,589,383	+		PP_1394	0.10	+0.2
1,589,383	+		PP_1394	0.10	-0.8
1,589,411	+		PP_1394	0.12	+0.6
1,589,445	+		PP_1394	0.14	-0.1
1,589,446	-		PP_1394	0.14	-2.4
1,589,471	-		PP_1394	0.16	-1.3
1,589,471	-		PP_1394	0.16	-0.1
1,589,576	+		PP_1394	0.22	-1.1
1,589,686	-		PP_1394	0.29	+0.9
1,590,096	+		PP_1394	0.54	-2.6
1,590,130	+		PP_1394	0.56	+0.1
1,590,131	-		PP_1394	0.56	-0.3
1,590,153	-		PP_1394	0.57	-1.8
1,590,321	-		PP_1394	0.68	-1.9
1,590,373	+		PP_1394	0.71	-1.9
1,590,591	-		PP_1394	0.84	-1.2
1,590,603	-		PP_1394	0.85	+2.3
1,590,603	-		PP_1394	0.85	+0.5
1,590,626	-		PP_1394	0.86	-0.3
1,590,643	+		PP_1394	0.87	+0.9
1,590,643	+		PP_1394	0.87	-2.2
1,590,643	+		PP_1394	0.87	-2.0
1,590,643	+				+0.9
1,590,644	-		PP_1394	0.87	-2.2
1,590,644	-		PP_1394	0.87	-0.2
1,590,644	-		PP_1394	0.87	+0.4
1,590,644	-		PP_1394	0.87	-1.3
1,590,644	-		PP_1394	0.87	+0.0
1,590,644	-		PP_1394	0.87	-3.1
1,590,644	-		PP_1394	0.87	-0.7
1,591,068	-		PP_1395	0.10	+0.9
1,591,329	-		PP_1395	0.39	-1.7
1,591,478	+		PP_1395	0.55	+0.6
1,591,479	-		PP_1395	0.55	+0.4
1,591,479	-		PP_1395	0.55	+2.1
1,591,646	+		PP_1395	0.73	-0.4
1,591,646	+		PP_1395	0.73	-1.9
1,591,646	+		PP_1395	0.73	-3.1
1,591,646	+		PP_1395	0.73	+0.5
1,591,646	+		PP_1395	0.73	+3.2
1,591,646	+		PP_1395	0.73	-1.1
1,591,646	+		PP_1395	0.73	+0.1
1,591,646	+		PP_1395	0.73	+0.3
1,591,647	-		PP_1395	0.73	+0.9
1,591,647	-		PP_1395	0.73	-1.0
1,591,647	-		PP_1395	0.73	+2.3
1,591,647	-		PP_1395	0.73	-0.4
1,591,647	-		PP_1395	0.73	-0.5
1,591,647	-		PP_1395	0.73	-3.1
1,591,647	-		PP_1395	0.73	-0.6
1,591,647	-		PP_1395	0.73	-0.1
1,591,647	-		PP_1395	0.73	-0.9
1,591,647	-		PP_1395	0.73	-0.4
1,591,647	-		PP_1395	0.73	+0.9
1,591,667	+		PP_1395	0.75	+1.9
1,591,667	+		PP_1395	0.75	-1.9
1,591,667	+		PP_1395	0.75	+1.9
1,591,668	-		PP_1395	0.75	-0.1
1,591,741	+		PP_1395	0.83	+2.9
1,591,750	+		PP_1395	0.84	+1.2
1,591,763	+		PP_1395	0.86	-0.0
1,591,764	-		PP_1395	0.86	+3.4
1,591,775	+		PP_1395	0.87	-0.3
1,591,775	+		PP_1395	0.87	-0.3
1,591,776	-		PP_1395	0.87	+1.1