Strain Fitness in Pseudomonas putida KT2440 around PP_1372

Experiment: pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 7
1,561,336	+		PP_1371	0.60	-1.3
1,561,337	-		PP_1371	0.60	+1.8
1,561,529	-		PP_1371	0.70	-0.9
1,561,529	-		PP_1371	0.70	-1.7
1,561,666	+		PP_1371	0.77	+3.2
1,561,666	+		PP_1371	0.77	-0.6
1,561,667	-		PP_1371	0.77	-2.5
1,561,712	-		PP_1371	0.80	+2.8
1,561,795	+		PP_1371	0.84	+1.2
1,561,815	+		PP_1371	0.85	+0.8
1,561,815	+		PP_1371	0.85	-2.3
1,561,958	-				-1.3
1,561,986	-				-0.5
1,561,986	-				+0.5
1,561,996	+				+1.2
1,561,996	+				-3.9
1,562,005	+				+1.0
1,562,005	+				-0.9
1,562,031	+				-2.0
1,562,095	+				+0.3
1,562,116	+				+1.4
1,562,116	+				-1.7
1,562,116	+				+0.4
1,562,116	+				-0.6
1,562,117	-				+0.6
1,562,117	-				+0.6
1,562,118	+				-0.4
1,562,118	+				-1.7
1,562,145	+				+1.2
1,562,146	-				+0.9
1,562,146	-				-0.4
1,562,191	+				+1.0
1,562,191	+				-1.4
1,562,191	+				+0.7
1,562,191	+				+0.9
1,562,192	-				-1.1
1,562,194	+				-2.8
1,562,194	+				+3.4
1,562,195	-				-1.2
1,562,204	-				+0.2
1,562,204	-				-2.0
1,562,204	-				-1.3
1,562,217	-				-0.2
1,562,229	-				-1.7
1,562,229	-				-2.0
1,562,229	-				-1.5
1,562,234	-				-0.1
1,562,252	+				+3.9
1,562,671	-		PP_1372	0.28	-2.6
1,562,924	+		PP_1372	0.45	+1.3
1,562,924	+		PP_1372	0.45	-0.8
1,562,925	-		PP_1372	0.45	-0.8
1,562,925	-				-1.1
1,562,925	-		PP_1372	0.45	-2.5
1,562,973	+		PP_1372	0.48	+1.5
1,562,973	+		PP_1372	0.48	+1.1
1,562,974	-		PP_1372	0.48	-2.8
1,563,162	+		PP_1372	0.61	+0.9
1,563,163	-		PP_1372	0.61	-1.5
1,563,362	+		PP_1372	0.75	-0.9
1,563,493	-		PP_1372	0.84	-2.4
1,563,732	+				+0.5
1,563,762	+				-1.0
1,563,762	+				-1.2
1,563,763	-				-1.1
1,563,798	+				+0.9
1,563,799	-				+2.4
1,563,804	+				+1.2
1,563,805	-				+0.9
1,563,811	+				+0.9