Strain Fitness in Pseudomonas putida KT2440 around PP_1347

Experiment: pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 7
1,535,603	-		PP_1346	0.50	-2.6
1,536,016	-		PP_1346	0.84	-0.4
1,536,063	+		PP_1346	0.88	+0.8
1,536,064	-		PP_1346	0.88	-1.2
1,536,064	-		PP_1346	0.88	+2.5
1,536,064	-		PP_1346	0.88	+3.2
1,536,066	-		PP_1346	0.88	+0.8
1,536,177	+				+1.0
1,536,177	+				-2.2
1,536,178	-				-2.9
1,536,203	+				-0.0
1,536,204	-				-0.4
1,536,204	-				-1.6
1,536,204	-				-3.1
1,536,204	-				-0.8
1,536,212	+				+1.1
1,536,212	+				+0.8
1,536,213	-				-2.7
1,536,290	+				-3.2
1,536,371	+				-0.7
1,536,371	+				-1.2
1,536,372	-				+0.8
1,536,372	-				-0.3
1,536,372	-				-1.2
1,536,398	+				-1.7
1,536,399	-				+0.8
1,536,453	-		PP_1347	0.14	-1.5
1,536,453	-		PP_1347	0.14	-2.5
1,536,773	-		PP_1347	0.64	-0.7
1,536,898	-		PP_1347	0.84	-1.0
1,536,923	+		PP_1347	0.88	-1.4
1,536,923	+		PP_1347	0.88	-0.8
1,536,924	-		PP_1347	0.88	+0.4
1,536,924	-		PP_1347	0.88	-2.5
1,536,924	-		PP_1347	0.88	-2.5
1,536,924	-		PP_1347	0.88	+1.6
1,536,924	-		PP_1347	0.88	-2.2
1,536,938	+				+1.4
1,536,939	-				+0.8
1,536,939	-				+2.7
1,536,988	+				+2.8
1,536,989	-				-0.2
1,536,989	-				-3.2
1,537,010	+				-0.2
1,537,010	+				+2.4
1,537,011	-				-1.5
1,537,011	-				+0.7
1,537,013	+				-0.7
1,537,178	+		PP_1348	0.19	+3.4
1,537,388	-				-3.1
1,537,388	-		PP_1348	0.42	-2.5
1,537,492	+		PP_1348	0.53	+1.8
1,537,492	+		PP_1348	0.53	-4.7
1,537,492	+		PP_1348	0.53	+0.8
1,537,492	+		PP_1348	0.53	-4.0
1,537,493	-		PP_1348	0.53	-4.1
1,537,493	-		PP_1348	0.53	-3.5
1,537,493	-		PP_1348	0.53	-3.3
1,537,493	-		PP_1348	0.53	-3.0
1,537,493	-		PP_1348	0.53	-3.5
1,537,504	+		PP_1348	0.54	+0.8
1,537,636	+		PP_1348	0.68	-3.0
1,537,637	-		PP_1348	0.68	+0.8
1,537,904	+				-3.0
1,537,966	+				-0.5
1,537,966	+				-2.3
1,537,966	+				-0.7
1,537,967	-				-1.6
1,537,967	-				-0.3
1,537,969	+				-0.4
1,537,970	-				-0.4
1,537,970	-				-0.1
1,537,970	-				+1.5