Strain Fitness in Pseudomonas putida KT2440 around PP_1275

Experiment: pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 7
1,456,066	-				-0.6
1,456,087	+				+0.3
1,456,154	-				+1.7
1,456,259	+		PP_1274	0.11	-1.7
1,456,278	+		PP_1274	0.13	-1.4
1,456,279	-		PP_1274	0.13	-1.7
1,456,333	-		PP_1274	0.20	-1.3
1,456,492	-		PP_1274	0.40	-3.7
1,456,593	+		PP_1274	0.52	+1.4
1,456,593	+		PP_1274	0.52	-2.1
1,456,602	+		PP_1274	0.53	+3.7
1,456,602	+		PP_1274	0.53	-1.5
1,456,642	-		PP_1274	0.58	-2.3
1,456,642	-		PP_1274	0.58	+1.0
1,456,824	+		PP_1274	0.80	-0.5
1,456,825	-		PP_1274	0.81	-0.5
1,457,029	-				+1.5
1,457,029	-				+1.9
1,457,162	+		PP_1275	0.32	+0.8
1,457,162	+		PP_1275	0.32	-0.4
1,457,162	+		PP_1275	0.32	+0.5
1,457,163	-		PP_1275	0.32	+0.1
1,457,202	-		PP_1275	0.40	-1.5
1,457,260	+		PP_1275	0.53	+1.1
1,457,300	+		PP_1275	0.62	-1.0
1,457,300	+		PP_1275	0.62	+0.6
1,457,300	+		PP_1275	0.62	+1.7
1,457,301	-		PP_1275	0.62	+3.4
1,457,512	+				-0.7
1,457,575	-				+2.2
1,457,575	-				+1.4
1,457,601	+				-0.3
1,457,805	-		PP_1276	0.36	+1.1
1,457,810	+		PP_1276	0.37	+2.9
1,457,810	+		PP_1276	0.37	+0.4
1,457,811	-		PP_1276	0.37	+0.1
1,457,811	-		PP_1276	0.37	-0.2
1,457,811	-		PP_1276	0.37	-1.0
1,457,811	-		PP_1276	0.37	+0.4
1,457,840	+				+2.1
1,457,936	+		PP_1276	0.64	-2.1
1,457,937	-		PP_1276	0.64	+3.2
1,457,937	-		PP_1276	0.64	-2.1
1,458,074	+				-0.8
1,458,074	+				-0.5
1,458,074	+				+2.3
1,458,074	+				-2.7
1,458,075	-				-0.8
1,458,075	-				+0.4
1,458,075	-				-0.0
1,458,075	-				+0.9
1,458,075	-				+0.9
1,458,099	-				+3.2
1,458,099	-				+0.7
1,458,141	+				-0.1
1,458,141	+				-0.7
1,458,142	-				-0.0
1,458,198	+				+0.7
1,458,198	+				-0.6
1,458,199	-				-2.3
1,458,199	-				+1.1
1,458,237	+				+0.1
1,458,237	+				-1.0
1,458,238	-				-3.4
1,458,318	+		PP_1277	0.12	+0.3
1,458,318	+		PP_1277	0.12	+0.6
1,458,319	-		PP_1277	0.12	+3.2