Strain Fitness in Pseudomonas putida KT2440 around PP_1230

Experiment: pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 7
1,406,579	+		PP_1229	0.61	+0.2
1,406,589	+		PP_1229	0.62	+0.5
1,406,590	-		PP_1229	0.62	-0.1
1,406,746	-		PP_1229	0.74	-1.5
1,406,759	+		PP_1229	0.75	+1.1
1,406,787	+		PP_1229	0.77	+0.4
1,406,788	-		PP_1229	0.77	-0.0
1,406,788	-		PP_1229	0.77	-0.5
1,406,795	+		PP_1229	0.77	+0.1
1,406,850	+		PP_1229	0.81	-1.3
1,406,850	+		PP_1229	0.81	+0.9
1,406,850	+		PP_1229	0.81	-1.5
1,406,850	+		PP_1229	0.81	+1.7
1,406,850	+		PP_1229	0.81	+0.9
1,406,851	-		PP_1229	0.82	+3.0
1,406,851	-		PP_1229	0.82	+0.8
1,406,851	-		PP_1229	0.82	-1.8
1,406,851	-		PP_1229	0.82	-1.8
1,406,856	+		PP_1229	0.82	-2.8
1,406,885	+		PP_1229	0.84	+0.1
1,406,898	+		PP_1229	0.85	-0.0
1,406,898	+		PP_1229	0.85	+0.8
1,406,898	+		PP_1229	0.85	-1.9
1,406,899	-		PP_1229	0.85	+0.1
1,406,899	-		PP_1229	0.85	+1.6
1,406,899	-		PP_1229	0.85	-0.1
1,406,899	-		PP_1229	0.85	+2.4
1,406,940	+		PP_1229	0.88	-0.9
1,406,941	-		PP_1229	0.88	+0.1
1,406,951	+				-1.7
1,406,951	+		PP_1229	0.89	+3.4
1,406,952	-		PP_1229	0.89	+0.2
1,407,015	+				+0.6
1,407,145	+				+0.9
1,407,145	+				-0.6
1,407,146	-				+1.0
1,407,146	-				-2.2
1,407,196	+				-2.8
1,407,305	+				+0.7
1,407,480	+				-1.9
1,407,480	+				-0.4
1,407,524	+				+2.9
1,407,543	+				-1.9
1,407,544	-				-1.0
1,407,544	-				-2.2
1,407,604	+				-1.5
1,407,605	-				-0.9
1,407,621	-				+2.2
1,407,621	-				+0.9
1,407,709	+		PP_1230	0.11	-1.9
1,407,709	+		PP_1230	0.11	+0.2
1,407,710	-		PP_1230	0.11	+0.9
1,408,253	+		PP_1230	0.47	+0.7
1,408,253	+		PP_1230	0.47	-1.1
1,408,253	+		PP_1230	0.47	+1.9
1,408,253	+		PP_1230	0.47	+0.4
1,408,253	+		PP_1230	0.47	+2.3
1,408,253	+		PP_1230	0.47	-2.6
1,408,254	-		PP_1230	0.47	+0.2
1,408,254	-		PP_1230	0.47	+0.3
1,408,254	-		PP_1230	0.47	+0.9
1,408,254	-		PP_1230	0.47	-2.8
1,408,254	-		PP_1230	0.47	+0.9
1,408,270	+		PP_1230	0.48	+1.9
1,408,377	+		PP_1230	0.55	+2.2
1,408,377	+		PP_1230	0.55	-0.1
1,408,378	-		PP_1230	0.55	+0.0
1,408,378	-		PP_1230	0.55	-3.8
1,408,395	-		PP_1230	0.56	+1.9
1,408,431	+		PP_1230	0.59	+0.7
1,408,956	-				-1.5
1,408,979	+				-0.3
1,409,099	+				-2.6
1,409,099	+				+0.5
1,409,100	-				+1.6
1,409,117	+				+0.8
1,409,156	+				-1.2
1,409,170	+				+0.2
1,409,170	+				-1.5
1,409,171	-				-3.9
1,409,171	-				-1.6
1,409,171	-				-1.4
1,409,171	-				-2.9
1,409,171	-				-3.5
1,409,192	-				-2.6
1,409,211	+				-1.5
1,409,212	-				-1.7
1,409,212	-				-4.0
1,409,263	-				-2.7
1,409,263	-				-4.0
1,409,288	-				-1.5
1,409,288	-				-3.2
1,409,476	-		PP_1231	0.14	-3.1
1,409,476	-		PP_1231	0.14	-3.3
1,409,478	+		PP_1231	0.14	+0.9
1,409,478	+		PP_1231	0.14	-4.5
1,409,479	-		PP_1231	0.14	+0.9
1,409,479	-		PP_1231	0.14	-3.6
1,409,647	+		PP_1231	0.30	-1.7
1,409,648	-		PP_1231	0.30	-1.5
1,409,749	-		PP_1231	0.39	+0.9
1,409,883	+		PP_1231	0.52	-1.5
1,409,883	+		PP_1231	0.52	+0.9
1,409,883	+		PP_1231	0.52	-2.6
1,409,884	-		PP_1231	0.52	-4.8