Strain Fitness in Pseudomonas putida KT2440 around PP_1104

Experiment: pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 7
1,260,649	-		PP_1103	0.67	+0.0
1,261,184	+		PP_1103	0.89	+0.3
1,261,327	+				-0.7
1,261,327	+				+0.6
1,261,328	-				-0.4
1,261,373	+				+0.7
1,261,374	-				+0.9
1,261,374	-				+0.7
1,261,483	+				+1.9
1,261,484	-				+3.6
1,261,484	-				-0.1
1,261,484	-				+0.9
1,261,484	-				+1.4
1,261,549	+				-0.1
1,261,550	-				+0.9
1,261,550	-				+0.7
1,261,550	-				-0.6
1,261,609	-				-0.6
1,261,616	+				-1.9
1,261,616	+				-1.1
1,261,616	+				+1.6
1,261,616	+				+0.6
1,261,617	-				-3.3
1,261,792	+		PP_1104	0.24	+1.9
1,262,057	+		PP_1104	0.48	+0.5
1,262,102	+		PP_1104	0.52	-0.9
1,262,102	+		PP_1104	0.52	-2.7
1,262,103	-		PP_1104	0.52	-1.7
1,262,103	-		PP_1104	0.52	+0.7
1,262,103	-		PP_1104	0.52	-0.1
1,262,148	+		PP_1104	0.56	-0.3
1,262,148	+		PP_1104	0.56	-0.3
1,262,176	+		PP_1104	0.59	+0.9
1,262,177	-		PP_1104	0.59	-1.9
1,262,237	+		PP_1104	0.64	+0.7
1,262,237	+		PP_1104	0.64	-0.6
1,262,425	+		PP_1104	0.81	+0.8
1,262,425	+		PP_1104	0.81	-3.0
1,262,425	+		PP_1104	0.81	-0.5
1,262,425	+		PP_1104	0.81	-1.1
1,262,425	+		PP_1104	0.81	-0.7
1,262,426	-		PP_1104	0.81	-1.1
1,262,492	-				-0.1
1,262,536	-				-0.9
1,262,536	-				+1.0
1,262,537	+				-0.4
1,262,691	-				-2.0
1,262,696	+				-0.3
1,262,696	+				-0.6
1,262,696	+				+0.9
1,262,697	-				-0.6
1,262,697	-				-1.4
1,262,697	-				-1.8
1,262,697	-				-0.1
1,262,742	-				+0.9
1,262,758	-				+2.2
1,262,844	-				-2.3
1,262,998	+		PP_1105	0.15	-2.6
1,262,999	-		PP_1105	0.15	-3.7
1,263,067	+		PP_1105	0.19	-1.7
1,263,068	-		PP_1105	0.19	-0.6
1,263,112	+		PP_1105	0.22	+2.3
1,263,112	+		PP_1105	0.22	-1.0
1,263,194	-		PP_1105	0.27	-2.3
1,263,194	-		PP_1105	0.27	-1.7
1,263,410	-		PP_1105	0.40	+0.9