Strain Fitness in Pseudomonas putida KT2440 around PP_1067

Experiment: pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 7
1,220,392	+		PP_1066	0.31	+1.4
1,220,392	+		PP_1066	0.31	+1.9
1,220,392	+		PP_1066	0.31	-1.2
1,220,955	+		PP_1066	0.74	+1.5
1,220,956	-		PP_1066	0.74	-0.3
1,221,014	+		PP_1066	0.78	-3.8
1,221,201	+				-0.0
1,221,218	+				-1.3
1,221,287	+				+0.9
1,221,546	+		PP_1067	0.13	-2.4
1,221,546	+		PP_1067	0.13	+0.1
1,221,546	+		PP_1067	0.13	+0.4
1,221,547	-		PP_1067	0.13	+2.0
1,221,579	-		PP_1067	0.15	+1.1
1,221,749	+		PP_1067	0.23	+1.9
1,221,907	+		PP_1067	0.32	-0.4
1,221,907	+		PP_1067	0.32	+3.1
1,221,907	+		PP_1067	0.32	-0.1
1,221,908	-		PP_1067	0.32	+0.3
1,221,908	-		PP_1067	0.32	-3.2
1,221,994	+		PP_1067	0.36	+0.1
1,221,994	+		PP_1067	0.36	-2.4
1,221,994	+		PP_1067	0.36	-0.1
1,221,994	+		PP_1067	0.36	-0.9
1,222,341	+		PP_1067	0.54	-2.0
1,222,341	+		PP_1067	0.54	+1.0
1,222,342	-		PP_1067	0.55	+0.9
1,222,415	+		PP_1067	0.58	-1.5
1,222,416	-		PP_1067	0.58	-0.7
1,222,461	+		PP_1067	0.61	+0.5
1,222,461	+		PP_1067	0.61	+0.4
1,222,462	-		PP_1067	0.61	-0.2
1,222,464	+		PP_1067	0.61	-1.3
1,222,464	+		PP_1067	0.61	+1.0
1,222,464	+		PP_1067	0.61	-1.8
1,222,465	-		PP_1067	0.61	-0.9
1,222,465	-		PP_1067	0.61	-0.2
1,222,686	+		PP_1067	0.73	-0.1
1,222,687	-		PP_1067	0.73	-0.5
1,222,689	+		PP_1067	0.73	-0.3
1,222,690	-		PP_1067	0.73	-1.4
1,222,708	+		PP_1067	0.74	-0.1
1,222,722	+		PP_1067	0.74	-0.9
1,222,723	-		PP_1067	0.74	+0.6
1,222,827	-		PP_1067	0.80	-0.5
1,222,981	-		PP_1067	0.88	-0.9
1,222,981	-		PP_1067	0.88	+0.5
1,222,986	+		PP_1067	0.88	-2.2
1,222,987	-		PP_1067	0.88	+0.7
1,222,987	-		PP_1067	0.88	-0.1
1,222,987	-		PP_1067	0.88	-0.4
1,222,987	-		PP_1067	0.88	-1.8
1,222,987	-		PP_1067	0.88	+1.3
1,223,085	+				-1.2
1,223,085	+				-1.6
1,223,133	-				+0.2
1,223,221	+				-1.7
1,223,222	-				+0.3
1,223,435	-		PP_1068	0.21	-2.1
1,223,520	+		PP_1068	0.32	-0.8
1,223,521	-		PP_1068	0.32	+0.4
1,223,521	-		PP_1068	0.32	-0.9
1,223,639	-		PP_1068	0.47	-1.3
1,224,070	+				-0.6
1,224,166	+		PP_1069	0.24	-0.1
1,224,166	+		PP_1069	0.24	-3.1
1,224,167	-		PP_1069	0.24	-0.6
1,224,167	-		PP_1069	0.24	-0.4
1,224,168	+		PP_1069	0.24	-1.1