Strain Fitness in Pseudomonas putida KT2440 around PP_1064

Experiment: pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 7
1,217,565	+				-2.7
1,217,565	+				-3.6
1,217,566	-				-4.2
1,217,566	-				-1.0
1,217,566	-				-1.5
1,217,566	-				-1.1
1,217,601	+		PP_1063	0.12	-2.1
1,217,602	-		PP_1063	0.12	-2.1
1,217,602	-		PP_1063	0.12	-2.3
1,217,602	-		PP_1063	0.12	-2.7
1,217,649	+		PP_1063	0.17	-1.6
1,217,649	+		PP_1063	0.17	-1.5
1,217,649	+		PP_1063	0.17	-3.4
1,217,650	-		PP_1063	0.17	-2.7
1,217,664	+		PP_1063	0.19	-3.2
1,217,749	+		PP_1063	0.28	+2.4
1,217,750	-		PP_1063	0.28	-1.7
1,217,827	-		PP_1063	0.36	-3.3
1,217,868	+		PP_1063	0.41	-3.1
1,217,868	+		PP_1063	0.41	-1.4
1,217,868	+		PP_1063	0.41	-0.1
1,217,868	+		PP_1063	0.41	-3.5
1,217,868	+		PP_1063	0.41	-2.1
1,217,868	+		PP_1063	0.41	-0.4
1,217,868	+		PP_1063	0.41	-2.5
1,217,868	+		PP_1063	0.41	+1.5
1,217,869	-		PP_1063	0.41	-2.3
1,217,869	-		PP_1063	0.41	-2.0
1,217,919	+		PP_1063	0.47	-2.7
1,217,937	+		PP_1063	0.48	+0.9
1,217,937	+		PP_1063	0.48	-3.4
1,217,937	+		PP_1063	0.48	-0.1
1,217,937	+				+0.9
1,217,937	+		PP_1063	0.48	+0.9
1,217,938	-		PP_1063	0.49	-2.3
1,217,938	-		PP_1063	0.49	-1.7
1,218,516	+				-3.4
1,218,517	-				-0.3
1,218,725	+		PP_1064	0.23	+1.0
1,218,726	-		PP_1064	0.23	-1.7
1,218,851	+		PP_1064	0.34	-0.8
1,218,851	+		PP_1064	0.34	+1.0
1,218,852	-		PP_1064	0.34	-2.4
1,218,929	+		PP_1064	0.41	-0.3
1,218,929	+		PP_1064	0.41	+1.9
1,218,929	+		PP_1064	0.41	-0.1
1,218,930	-		PP_1064	0.41	+2.4
1,218,959	+		PP_1064	0.44	+0.9
1,218,960	-		PP_1064	0.44	+1.4
1,219,029	+		PP_1064	0.50	-2.0
1,219,030	-		PP_1064	0.50	+1.6
1,219,252	-		PP_1064	0.69	+0.1
1,219,252	-		PP_1064	0.69	-2.0
1,219,296	-		PP_1064	0.73	+0.7
1,219,404	+		PP_1064	0.83	-0.5
1,219,404	+		PP_1064	0.83	+1.9
1,219,425	+		PP_1064	0.85	+1.6
1,219,554	-				+0.3
1,219,554	-				-0.1
1,219,720	+		PP_1065	0.30	+0.0
1,219,720	+		PP_1065	0.30	+0.3
1,219,720	+		PP_1065	0.30	-1.7
1,219,721	-		PP_1065	0.31	-2.0
1,219,721	-		PP_1065	0.31	-0.8
1,219,721	-		PP_1065	0.31	+0.8
1,219,721	-		PP_1065	0.31	+0.6
1,219,721	-		PP_1065	0.31	-1.5
1,219,721	-		PP_1065	0.31	-0.5
1,219,724	+		PP_1065	0.32	-1.1
1,219,724	+		PP_1065	0.32	-2.6
1,219,724	+		PP_1065	0.32	+1.3
1,219,724	+		PP_1065	0.32	+0.3
1,219,724	+		PP_1065	0.32	+0.7
1,219,725	-		PP_1065	0.32	+0.9
1,219,725	-		PP_1065	0.32	+1.5
1,219,725	-		PP_1065	0.32	-0.4
1,219,725	-		PP_1065	0.32	-1.5
1,219,823	+		PP_1065	0.61	+1.9
1,219,823	+		PP_1065	0.61	-2.9
1,219,824	-		PP_1065	0.61	-0.1
1,219,824	-		PP_1065	0.61	-2.3
1,219,824	-		PP_1065	0.61	+0.4
1,219,824	-		PP_1065	0.61	-0.9
1,219,874	+		PP_1065	0.76	-0.2
1,219,875	-		PP_1065	0.76	+2.4
1,219,875	-		PP_1065	0.76	+0.1
1,219,877	+		PP_1065	0.77	+0.3
1,219,877	+		PP_1065	0.77	-0.3
1,219,877	+		PP_1065	0.77	-0.6
1,219,878	-		PP_1065	0.77	+0.1
1,219,878	-		PP_1065	0.77	-0.7
1,219,878	-		PP_1065	0.77	+4.2
1,219,991	-				+0.1
1,220,185	+		PP_1066	0.16	-1.1
1,220,392	+		PP_1066	0.31	+1.4
1,220,392	+		PP_1066	0.31	+1.9
1,220,392	+		PP_1066	0.31	-1.2