Strain Fitness in Pseudomonas putida KT2440 around PP_0885

Experiment: pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 7
1,026,238	+		PP_0884	0.54	+0.9
1,026,288	+		PP_0884	0.57	+0.1
1,026,306	+		PP_0884	0.58	-2.8
1,026,307	-		PP_0884	0.59	-0.5
1,026,401	+		PP_0884	0.64	+1.2
1,026,401	+		PP_0884	0.64	+0.3
1,026,402	-		PP_0884	0.64	-1.3
1,026,402	-		PP_0884	0.64	-0.1
1,026,402	-		PP_0884	0.64	-2.2
1,026,415	-				-0.7
1,026,576	+		PP_0884	0.75	-2.3
1,026,577	-		PP_0884	0.75	+2.4
1,026,711	+		PP_0884	0.84	+1.9
1,026,711	+		PP_0884	0.84	+2.4
1,026,801	+		PP_0884	0.90	-2.1
1,026,801	+		PP_0884	0.90	-2.3
1,026,801	+		PP_0884	0.90	+0.9
1,026,801	+		PP_0884	0.90	-1.1
1,026,801	+		PP_0884	0.90	-0.5
1,026,802	-		PP_0884	0.90	-0.5
1,026,841	-				-2.5
1,026,869	-				+0.7
1,027,037	-				+0.9
1,027,041	+				+2.4
1,027,115	+				-2.0
1,027,115	+				-1.1
1,027,115	+				-0.5
1,027,116	-				-0.8
1,027,136	+				-0.6
1,027,136	+				-0.1
1,027,199	+				-1.5
1,027,231	+				+1.0
1,027,246	+				+2.4
1,027,246	+				+0.9
1,027,247	-				+0.2
1,027,248	+				+0.9
1,027,248	+				-2.5
1,027,248	+				+1.0
1,027,248	+				+0.9
1,027,248	+				+0.4
1,027,249	-				-1.0
1,027,249	-				+0.9
1,027,249	-				+0.9
1,027,249	-				-0.6
1,027,249	-				-2.0
1,027,249	-				-3.4
1,027,334	+		PP_0885	0.14	-1.1
1,027,334	+		PP_0885	0.14	-0.2
1,027,334	+		PP_0885	0.14	-2.1
1,027,335	-		PP_0885	0.14	-2.7
1,027,335	-		PP_0885	0.14	-1.4
1,027,335	-		PP_0885	0.14	+0.2
1,027,379	+		PP_0885	0.16	+0.7
1,027,472	+		PP_0885	0.22	-2.3
1,027,472	+		PP_0885	0.22	+0.9
1,027,472	+		PP_0885	0.22	+2.1
1,027,472	+		PP_0885	0.22	-2.8
1,027,487	+		PP_0885	0.23	-3.0
1,027,487	+		PP_0885	0.23	-1.5
1,027,487	+		PP_0885	0.23	-2.8
1,027,488	-		PP_0885	0.23	+1.0
1,027,510	-		PP_0885	0.24	-0.6
1,027,569	-		PP_0885	0.28	+1.2
1,027,569	-		PP_0885	0.28	-0.8
1,027,743	-		PP_0885	0.39	-0.3
1,027,857	-		PP_0885	0.46	-0.4
1,027,863	+		PP_0885	0.46	+1.1
1,027,863	+		PP_0885	0.46	-3.1
1,027,863	+		PP_0885	0.46	+0.2
1,027,865	+		PP_0885	0.46	-0.4
1,027,866	-		PP_0885	0.46	-1.4
1,027,866	-		PP_0885	0.46	-0.6
1,027,866	-		PP_0885	0.46	-0.9
1,027,918	+		PP_0885	0.49	+0.9
1,028,097	-		PP_0885	0.60	+0.9
1,028,165	-		PP_0885	0.65	-1.6
1,028,325	-		PP_0885	0.74	-0.9
1,028,325	-		PP_0885	0.74	-2.1
1,028,343	-		PP_0885	0.76	-0.3
1,028,433	-		PP_0885	0.81	-0.6
1,028,477	+		PP_0885	0.84	-2.9
1,028,477	+		PP_0885	0.84	-0.6
1,028,477	+		PP_0885	0.84	-3.1
1,028,478	-		PP_0885	0.84	+0.2
1,028,609	+				-1.1
1,028,610	-				+2.4
1,028,610	-				-1.0
1,028,798	-				+3.2
1,028,798	-				+0.5
1,028,798	-				+3.7
1,028,801	+				-2.3
1,028,801	+				+0.1
1,028,801	+				+1.9
1,028,801	+				+0.3
1,028,801	+				+0.2
1,028,801	+				-1.3
1,028,802	-				-0.8
1,028,802	-				-1.8
1,028,830	+				+1.0
1,028,831	-				-1.0
1,028,831	-				+1.7
1,028,831	-				-1.2
1,028,838	+				+2.4
1,028,839	-				+1.5
1,028,839	-				+0.9
1,028,888	+				+0.6
1,028,949	+				-1.6
1,028,950	-				-0.4
1,028,950	-				-2.1
1,028,966	-				+0.2
1,028,978	-				+3.4
1,029,004	+				+1.4
1,029,029	-				-1.4
1,029,122	-				-2.3
1,029,185	+				+0.1
1,029,299	-		PP_0886	0.25	-1.9
1,029,299	-		PP_0886	0.25	+1.0
1,029,455	+		PP_0886	0.47	-2.6
1,029,679	+		PP_0886	0.78	+0.0
1,029,680	-		PP_0886	0.78	+0.5