Experiment: pH 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0806 and PP_0807 are separated by 190 nucleotides PP_0807 and PP_0808 are separated by 155 nucleotides
PP_0806: PP_0806 - putative Surface adhesion protein, at 926,689 to 945,621
_0806
PP_0807: PP_0807 - DNA-binding transcriptional dual regulator (NO), at 945,812 to 947,368
_0807
PP_0808: PP_0808 - Flavohemoprotein, at 947,524 to 948,702
_0808
Position (kb) 945
946
947
948 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 944.872 kb on - strand at 945.279 kb on + strand at 945.353 kb on + strand at 945.354 kb on - strand at 945.396 kb on + strand at 945.396 kb on + strand at 945.397 kb on - strand at 945.550 kb on + strand at 945.558 kb on + strand at 945.558 kb on + strand at 945.680 kb on + strand at 945.680 kb on + strand at 945.680 kb on + strand at 945.703 kb on + strand at 945.703 kb on + strand at 945.703 kb on + strand at 945.703 kb on + strand at 945.703 kb on + strand at 945.703 kb on + strand at 945.703 kb on + strand at 945.704 kb on - strand at 945.704 kb on - strand at 945.704 kb on - strand at 945.750 kb on + strand at 945.750 kb on + strand at 945.750 kb on + strand at 945.750 kb on + strand at 945.750 kb on + strand at 945.750 kb on + strand at 945.750 kb on + strand at 945.751 kb on - strand at 945.751 kb on - strand at 945.751 kb on - strand at 945.751 kb on - strand at 945.752 kb on + strand at 945.752 kb on + strand at 945.752 kb on + strand at 945.752 kb on + strand at 945.752 kb on + strand at 945.752 kb on + strand at 945.752 kb on + strand at 945.752 kb on + strand at 945.752 kb on + strand at 945.752 kb on + strand at 945.752 kb on + strand at 945.752 kb on + strand at 945.752 kb on + strand at 945.753 kb on - strand at 945.753 kb on - strand at 945.753 kb on - strand at 945.753 kb on - strand at 945.753 kb on - strand at 945.753 kb on - strand at 945.753 kb on - strand at 945.791 kb on + strand at 945.803 kb on - strand at 945.936 kb on + strand at 945.936 kb on + strand at 945.937 kb on - strand at 945.937 kb on - strand at 945.940 kb on + strand at 945.940 kb on + strand at 945.940 kb on + strand at 945.941 kb on - strand at 945.941 kb on - strand at 946.069 kb on + strand, within PP_0807 at 946.070 kb on - strand, within PP_0807 at 946.070 kb on - strand, within PP_0807 at 946.070 kb on - strand, within PP_0807 at 946.239 kb on + strand, within PP_0807 at 946.240 kb on - strand, within PP_0807 at 946.240 kb on - strand, within PP_0807 at 946.251 kb on - strand, within PP_0807 at 946.318 kb on - strand, within PP_0807 at 946.318 kb on - strand, within PP_0807 at 946.452 kb on - strand, within PP_0807 at 946.452 kb on - strand, within PP_0807 at 946.874 kb on - strand, within PP_0807 at 947.129 kb on + strand, within PP_0807 at 947.129 kb on + strand, within PP_0807 at 947.185 kb on + strand, within PP_0807 at 947.290 kb on - strand at 947.564 kb on + strand at 947.565 kb on - strand at 947.565 kb on - strand at 947.565 kb on - strand at 947.609 kb on - strand at 947.609 kb on - strand at 947.630 kb on - strand at 947.713 kb on + strand, within PP_0808 at 947.713 kb on + strand, within PP_0808 at 947.714 kb on - strand, within PP_0808 at 947.948 kb on - strand, within PP_0808 at 947.949 kb on + strand, within PP_0808 at 947.950 kb on - strand, within PP_0808 at 947.950 kb on - strand, within PP_0808 at 947.950 kb on - strand, within PP_0808 at 948.094 kb on + strand, within PP_0808 at 948.094 kb on + strand, within PP_0808 at 948.095 kb on - strand, within PP_0808 at 948.095 kb on - strand, within PP_0808 at 948.095 kb on - strand, within PP_0808 at 948.142 kb on + strand, within PP_0808 at 948.142 kb on + strand, within PP_0808 at 948.142 kb on + strand, within PP_0808 at 948.143 kb on - strand, within PP_0808 at 948.143 kb on - strand, within PP_0808 at 948.220 kb on + strand, within PP_0808 at 948.221 kb on - strand, within PP_0808 at 948.221 kb on - strand, within PP_0808 at 948.249 kb on + strand, within PP_0808
Per-strain Table
Position Strand Gene LocusTag Fraction pH 7 remove 944,872 - +1.3 945,279 + +0.3 945,353 + +0.1 945,354 - +0.4 945,396 + -0.7 945,396 + +0.1 945,397 - +1.2 945,550 + +1.0 945,558 + -0.5 945,558 + +0.3 945,680 + +2.6 945,680 + +1.5 945,680 + +1.3 945,703 + +0.3 945,703 + -0.4 945,703 + +1.2 945,703 + +3.3 945,703 + +0.9 945,703 + +2.0 945,703 + +0.4 945,704 - +0.3 945,704 - -2.2 945,704 - +1.2 945,750 + +0.7 945,750 + +1.1 945,750 + +1.9 945,750 + +2.4 945,750 + -0.8 945,750 + +2.4 945,750 + +0.9 945,751 - +2.1 945,751 - +0.5 945,751 - -0.1 945,751 - +0.8 945,752 + +1.9 945,752 + +0.3 945,752 + -1.3 945,752 + +1.6 945,752 + +2.4 945,752 + +2.0 945,752 + +1.1 945,752 + -0.6 945,752 + -1.7 945,752 + +4.9 945,752 + +0.6 945,752 + +0.5 945,752 + +0.9 945,753 - +2.0 945,753 - +1.7 945,753 - -0.7 945,753 - +0.8 945,753 - +0.2 945,753 - -0.0 945,753 - +1.2 945,791 + -1.1 945,803 - +4.2 945,936 + +0.6 945,936 + -1.0 945,937 - -0.1 945,937 - +1.9 945,940 + -0.9 945,940 + -0.1 945,940 + +1.9 945,941 - -0.8 945,941 - +0.2 946,069 + PP_0807 0.17 +0.9 946,070 - PP_0807 0.17 -0.2 946,070 - PP_0807 0.17 -2.0 946,070 - PP_0807 0.17 +0.1 946,239 + PP_0807 0.27 -0.6 946,240 - PP_0807 0.27 -0.1 946,240 - PP_0807 0.27 +0.6 946,251 - PP_0807 0.28 +0.5 946,318 - PP_0807 0.32 +0.9 946,318 - PP_0807 0.32 +0.3 946,452 - PP_0807 0.41 +1.2 946,452 - PP_0807 0.41 -3.6 946,874 - PP_0807 0.68 -0.1 947,129 + PP_0807 0.85 -2.9 947,129 + PP_0807 0.85 -0.3 947,185 + PP_0807 0.88 +0.7 947,290 - +1.9 947,564 + -3.0 947,565 - +0.3 947,565 - +0.2 947,565 - -1.4 947,609 - -1.1 947,609 - -0.8 947,630 - -0.9 947,713 + PP_0808 0.16 -0.5 947,713 + PP_0808 0.16 +0.9 947,714 - PP_0808 0.16 -0.4 947,948 - PP_0808 0.36 +0.0 947,949 + PP_0808 0.36 -3.2 947,950 - PP_0808 0.36 +1.7 947,950 - PP_0808 0.36 -0.5 947,950 - PP_0808 0.36 -0.8 948,094 + PP_0808 0.48 -0.8 948,094 + PP_0808 0.48 +1.3 948,095 - PP_0808 0.48 +2.9 948,095 - PP_0808 0.48 +2.4 948,095 - PP_0808 0.48 +2.4 948,142 + PP_0808 0.52 +0.9 948,142 + PP_0808 0.52 -0.2 948,142 + PP_0808 0.52 -2.7 948,143 - PP_0808 0.53 -0.5 948,143 - PP_0808 0.53 +1.9 948,220 + PP_0808 0.59 -3.4 948,221 - PP_0808 0.59 -2.7 948,221 - PP_0808 0.59 +2.9 948,249 + PP_0808 0.61 +2.4
Or see this region's nucleotide sequence