Experiment: pH 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0354 and PP_0355 are separated by 92 nucleotides PP_0355 and PP_0356 are separated by 46 nucleotides
PP_0354: PP_0354 - CBS domain protein, at 430,376 to 432,313
_0354
PP_0355: PP_0355 - Response regulator, at 432,406 to 432,975
_0355
PP_0356: PP_0356 - malate synthase G, at 433,022 to 435,199
_0356
Position (kb) 432
433 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 431.497 kb on + strand, within PP_0354 at 431.498 kb on - strand, within PP_0354 at 431.498 kb on - strand, within PP_0354 at 431.553 kb on + strand, within PP_0354 at 431.553 kb on + strand, within PP_0354 at 431.602 kb on + strand, within PP_0354 at 431.602 kb on + strand, within PP_0354 at 431.603 kb on - strand, within PP_0354 at 431.603 kb on - strand, within PP_0354 at 431.606 kb on + strand, within PP_0354 at 431.606 kb on + strand, within PP_0354 at 431.606 kb on + strand, within PP_0354 at 431.606 kb on + strand, within PP_0354 at 431.606 kb on + strand, within PP_0354 at 431.607 kb on - strand, within PP_0354 at 431.607 kb on - strand, within PP_0354 at 431.607 kb on - strand, within PP_0354 at 431.647 kb on + strand, within PP_0354 at 431.648 kb on - strand, within PP_0354 at 431.649 kb on - strand, within PP_0354 at 431.831 kb on + strand, within PP_0354 at 431.832 kb on - strand, within PP_0354 at 431.832 kb on - strand, within PP_0354 at 432.105 kb on + strand, within PP_0354 at 432.105 kb on + strand, within PP_0354 at 432.105 kb on + strand, within PP_0354 at 432.106 kb on - strand, within PP_0354 at 432.106 kb on - strand, within PP_0354 at 432.159 kb on + strand at 432.160 kb on - strand at 432.160 kb on - strand at 432.344 kb on - strand at 432.345 kb on + strand at 432.345 kb on + strand at 432.346 kb on - strand at 432.346 kb on - strand at 432.346 kb on - strand at 432.346 kb on - strand at 432.347 kb on + strand at 432.347 kb on + strand at 432.347 kb on + strand at 432.347 kb on + strand at 432.348 kb on - strand at 432.348 kb on - strand at 432.348 kb on - strand at 432.351 kb on + strand at 432.351 kb on + strand at 432.351 kb on + strand at 432.351 kb on + strand at 432.352 kb on - strand at 432.352 kb on - strand at 432.354 kb on - strand at 432.354 kb on - strand at 432.355 kb on + strand at 432.356 kb on - strand at 432.357 kb on + strand at 432.357 kb on + strand at 432.357 kb on + strand at 432.423 kb on + strand at 432.423 kb on + strand at 432.423 kb on + strand at 432.424 kb on - strand at 432.424 kb on - strand at 432.424 kb on - strand at 432.429 kb on + strand at 432.429 kb on + strand at 432.430 kb on - strand at 432.430 kb on - strand at 432.430 kb on - strand at 432.491 kb on + strand, within PP_0355 at 432.491 kb on + strand, within PP_0355 at 432.491 kb on + strand, within PP_0355 at 432.492 kb on - strand, within PP_0355 at 432.724 kb on + strand, within PP_0355 at 432.725 kb on - strand, within PP_0355 at 432.733 kb on + strand, within PP_0355 at 432.734 kb on - strand, within PP_0355 at 432.744 kb on + strand, within PP_0355 at 432.745 kb on - strand, within PP_0355 at 432.759 kb on + strand, within PP_0355 at 432.993 kb on - strand at 432.993 kb on - strand at 433.023 kb on + strand at 433.023 kb on + strand at 433.023 kb on + strand at 433.023 kb on + strand at 433.023 kb on + strand at 433.023 kb on + strand at 433.024 kb on - strand at 433.024 kb on - strand at 433.024 kb on - strand at 433.024 kb on - strand at 433.110 kb on - strand at 433.110 kb on - strand at 433.171 kb on - strand at 433.526 kb on + strand, within PP_0356 at 433.527 kb on - strand, within PP_0356 at 433.543 kb on - strand, within PP_0356 at 433.894 kb on + strand, within PP_0356
Per-strain Table
Position Strand Gene LocusTag Fraction pH 7 remove 431,497 + PP_0354 0.58 +2.1 431,498 - PP_0354 0.58 -0.9 431,498 - PP_0354 0.58 -1.2 431,553 + PP_0354 0.61 -0.8 431,553 + PP_0354 0.61 -1.3 431,602 + PP_0354 0.63 -2.0 431,602 + PP_0354 0.63 -2.5 431,603 - PP_0354 0.63 -1.3 431,603 - PP_0354 0.63 -2.0 431,606 + PP_0354 0.63 +2.1 431,606 + PP_0354 0.63 +2.5 431,606 + PP_0354 0.63 -0.3 431,606 + PP_0354 0.63 -0.1 431,606 + PP_0354 0.63 +1.3 431,607 - PP_0354 0.64 -0.2 431,607 - PP_0354 0.64 +0.1 431,607 - PP_0354 0.64 +2.4 431,647 + PP_0354 0.66 +0.8 431,648 - PP_0354 0.66 -3.4 431,649 - PP_0354 0.66 +0.8 431,831 + PP_0354 0.75 +0.8 431,832 - PP_0354 0.75 -1.2 431,832 - PP_0354 0.75 +3.4 432,105 + PP_0354 0.89 +2.4 432,105 + PP_0354 0.89 +0.9 432,105 + PP_0354 0.89 +1.6 432,106 - PP_0354 0.89 +0.8 432,106 - PP_0354 0.89 -0.5 432,159 + -0.7 432,160 - +0.2 432,160 - +0.5 432,344 - -0.1 432,345 + +1.8 432,345 + +1.7 432,346 - -1.7 432,346 - -1.1 432,346 - -1.5 432,346 - -0.3 432,347 + +1.3 432,347 + +2.3 432,347 + +1.6 432,347 + +2.5 432,348 - -0.5 432,348 - +0.4 432,348 - -1.4 432,351 + +1.8 432,351 + +1.5 432,351 + +2.1 432,351 + +2.2 432,352 - -2.1 432,352 - +0.3 432,354 - +1.4 432,354 - -0.3 432,355 + +2.1 432,356 - -0.8 432,357 + +2.5 432,357 + -0.1 432,357 + +4.1 432,423 + +1.7 432,423 + +0.0 432,423 + +0.9 432,424 - -0.9 432,424 - +0.9 432,424 - -0.7 432,429 + +0.9 432,429 + +2.9 432,430 - -0.5 432,430 - -1.2 432,430 - -0.3 432,491 + PP_0355 0.15 +2.7 432,491 + PP_0355 0.15 +2.2 432,491 + PP_0355 0.15 +2.5 432,492 - PP_0355 0.15 -1.7 432,724 + PP_0355 0.56 -2.4 432,725 - PP_0355 0.56 +1.2 432,733 + PP_0355 0.57 -3.0 432,734 - PP_0355 0.58 +0.8 432,744 + PP_0355 0.59 +0.7 432,745 - PP_0355 0.59 +0.5 432,759 + PP_0355 0.62 -1.3 432,993 - +2.8 432,993 - +4.3 433,023 + +0.8 433,023 + +0.2 433,023 + -0.8 433,023 + -0.1 433,023 + -0.0 433,023 + -0.2 433,024 - +2.2 433,024 - -1.9 433,024 - +0.8 433,024 - +0.9 433,110 - -2.9 433,110 - -1.5 433,171 - +1.0 433,526 + PP_0356 0.23 +1.2 433,527 - PP_0356 0.23 +0.4 433,543 - PP_0356 0.24 -0.6 433,894 + PP_0356 0.40 -0.6
Or see this region's nucleotide sequence